Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03905 ATGAATCAACTGCATCATCAACCGCCGCTAAACTCCTCCAAAACTCCATCCTCTACGGTGGCGCCAGATTCACCTCCGCCACACATCATCACCAATCGCAAAGACACTGTCAGGGAGAGGAGTGAGGTGGAATCTCATGATCCAACTGTTGCTAGAAAAGTTCAGAAGGCTGACCGTGAGAAAATCAGGAGGGATCGGTTGAATGATCAGTTTCATGAATTGGGAAACGCGTTAGATCCTGATAGACCGCGGAACGACAAAGCAACCATTATCTCAGAGACAATTCAAGTGTTGAAAGACATAACTGCTGAAGTTGATAGGCTGAAAACAGAACATAAAGCACTTTCTGAAGAGTCGCGCGAACTAGTTCAAGAAAAGAATGAACTCCGGGAAGAGAAAGCGTCGTTAAAATCTGATATACAAAATCTTAATTCGCAGTATCAGCAGAGAGTTAGAGTCATGCCTCCATGGACTGCAATGGACGCTTCTGTTGTTATGAGTAGCCCTTATCCATATCCAGTTCCTATGCCAATCCCTCCTCCTCCAGTTTCCATTCACCCACATATGCAACCTTTTCCCTACTTTGGAAACCAAAATCCTGGGCATGTTCCAAGTATGTGCTCAATGTATATTCCATTCTCTGCTCCCGCTAACCCTCCGATAGAGATGCCATCAACTCAGTATGCCTCTACATCGCGCGTGTTGAATCGAAAAGAGTCGCGGAACAAGTCACCGGGTCATAGAAGACCTAATGATGCCAAAAGATGTAGTGTTTCTCCTGATGTGGCTACAGAACTTGAACTTAAGATGCCTGGATCATCAACACAACAGGTAGATTATAAAGATTCCATGTCTGGAGGAAGGAAGGGCAAGCATTCGGTGATGAGTGATAGAATCATCATAGATGAGAGTGCTTCGAGCCAGTATTCTCCATCTCAAGGACCTCAAGATAGCTTCGACAGCGTTGGACACACCCCAAAGGTTGTTGATTGA 993 0.4522 MNQLHHQPPLNSSKTPSSTVAPDSPPPHIITNRKDTVRERSEVESHDPTVARKVQKADREKIRRDRLNDQFHELGNALDPDRPRNDKATIISETIQVLKDITAEVDRLKTEHKALSEESRELVQEKNELREEKASLKSDIQNLNSQYQQRVRVMPPWTAMDASVVMSSPYPYPVPMPIPPPPVSIHPHMQPFPYFGNQNPGHVPSMCSMYIPFSAPANPPIEMPSTQYASTSRVLNRKESRNKSPGHRRPNDAKRCSVSPDVATELELKMPGSSTQQVDYKDSMSGGRKGKHSVMSDRIIIDESASSQYSPSQGPQDSFDSVGHTPKVVD 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03905 330 Pfam Helix-loop-helix DNA-binding domain 52 100 IPR011598 GO:0046983
Vifa3g03905 330 PANTHER TRANSCRIPTION FACTOR BHLH121 8 323 IPR044579 GO:0003700|GO:0006879
Vifa3g03905 330 CDD bHLH_AtILR3_like 56 130 - -
Vifa3g03905 330 Gene3D - 50 133 IPR036638 GO:0046983
Vifa3g03905 330 MobiDBLite consensus disorder prediction 1 19 - -
Vifa3g03905 330 MobiDBLite consensus disorder prediction 222 330 - -
Vifa3g03905 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 51 101 IPR011598 GO:0046983
Vifa3g03905 330 MobiDBLite consensus disorder prediction 1 68 - -
Vifa3g03905 330 MobiDBLite consensus disorder prediction 236 255 - -
Vifa3g03905 330 MobiDBLite consensus disorder prediction 284 298 - -
Vifa3g03905 330 Coils Coil 91 146 - -
Vifa3g03905 330 MobiDBLite consensus disorder prediction 300 320 - -
Vifa3g03905 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 51 120 IPR036638 GO:0046983
Vifa3g03905 330 SMART finulus 57 107 IPR011598 GO:0046983
Vifa3g03905 330 MobiDBLite consensus disorder prediction 32 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03905 Vifa-Chr3 1153920518 1153922300 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03905 51 275 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 51.055 5.05e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa3g03905 HLH 1.5e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03905 - - adu:107487484 368.237