Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03898 ATGTGTAAAATCAAAGGGAAGTGTGGACCTAATTCAATTTGTATGCCTAGAGAAGATTTCTACAATTCTACTTCTTGTATTTGTCCTTCTGGTTTTGAGCCTGTTGAAGGTGGAAGTGAAGTTGGTTGTAAGAGGAAAATTCCACTTACAAATAACACTCATTTTATTAGGCTTGATTATGTTAACTATACGAGTAGTGGTTCGATGAATCAAATCGATGCTTTAAATTACACAATTTGTGAAGCAAGTTGTAAGAGAAACTCAAGTTGTCTTGGATTTGGATTCAAGTATGATGGATTGGGCTATTGTGTTTTGTTACAAGGTAAAGAGCTTCAATATGGTTTATGGTCGCCCGGGACTGAACTCGCTTTGTTTTTGAAAGTTGATCAGAAGGAATCTGAAGGTTCGAATTTCATTGGTATGACGGAAGTGATGCAGACGACTTGTCCTGTGAGGATAAGTTTGCCTTTACCGCCGAAAGATTCAAACACCACGATGAGAAATATTGTGATTATATGCACGCTTTTTGCGGCGGAACTTATTGCTGGTGTGGCTTTCTTTTGGTCTTTCCTTAAGAGGTATATCAAGTATAGGGACATGGCTACCACTTTGGGGCTTGAGCTTTTACCTGCAGGTGGTCCGAAACGATTTACCTACTCGGAGATCAAAGCCGCGACTAATGATTTCTCAAATCTCATCGGGAAAGGTGGGTTTGGAGATGTCTACAAAGGTGAGTTGCCGGATCATCGTGTTGTCGCGGTGAAGAGTTTACAGAATGTTACTGGTGGTGATGCTGAATTTTGGGCGGAAGTTACAATCATTGCAAGAATGCATCACTTGAACTTGGTTCGATTGTGGGGCTTCTGCGCTGAGAAAGGCCAAAGGATACTTGTTTATGAGTACATTCCGGGTGGATCATTGGATAAGTATCTCTTTAGAGTTAAATCTCGAAAGGCGAGTGGTGTATCTGAATCCGAACAGAGTCATGATAATAGCTCAAATCCAAGTACCTTAGAGAAACCTGTTTTGGATTGGAACATGAGGTATAGAATTGCTCTTGGTATGGCTCGGGCTATCGCGTATCTACACGAGGAGTGTTTGGAATGGGTTTTGCATTGTGATATAAAGCCGGAGAACATTCTCTTAGGCGATGATTGTTGTCCTAAGATATCGGATTTCGGATTGGCGAAACTGAGGAAAAAAGAAGACATGGTGACTATGTCAAGACGGAGAGGAACTCCTGGTTATATGGCACCAGAATGGATAACAGCAGATCCAATAACTTCAAAAGCCGATGTCTATAGTTTCGGTATGGTGCTGTTGGAGCTTGTGAGCGGAGTGAGGAACTTCGAGATTCAAGGATCTGTGGCGAGGAGCGATGAATGGTATTTTCCAGGATGGGCTTTTGATAAGATGTTTAAGGAAATGAAAGTTGAAGAAATTCTTGATAGTCAAATTTCTCATGCTTATGATAGTAAATCACATTTTCAGTTGGTTAATAGAATGGTGAAGACTGCAATGTGGTGTTTGCAGGATAGGCCTGAGGCAAGGCCAACAATGGGGAAGGTAGCTAAGATGATTGAAGGGACTGTGGAGATCATGGAACCTAAAAAGCCAACTGTTTTCTTCCTTGGAGAAGAGTAG 1644 0.4142 MCKIKGKCGPNSICMPREDFYNSTSCICPSGFEPVEGGSEVGCKRKIPLTNNTHFIRLDYVNYTSSGSMNQIDALNYTICEASCKRNSSCLGFGFKYDGLGYCVLLQGKELQYGLWSPGTELALFLKVDQKESEGSNFIGMTEVMQTTCPVRISLPLPPKDSNTTMRNIVIICTLFAAELIAGVAFFWSFLKRYIKYRDMATTLGLELLPAGGPKRFTYSEIKAATNDFSNLIGKGGFGDVYKGELPDHRVVAVKSLQNVTGGDAEFWAEVTIIARMHHLNLVRLWGFCAEKGQRILVYEYIPGGSLDKYLFRVKSRKASGVSESEQSHDNSSNPSTLEKPVLDWNMRYRIALGMARAIAYLHEECLEWVLHCDIKPENILLGDDCCPKISDFGLAKLRKKEDMVTMSRRRGTPGYMAPEWITADPITSKADVYSFGMVLLELVSGVRNFEIQGSVARSDEWYFPGWAFDKMFKEMKVEEILDSQISHAYDSKSHFQLVNRMVKTAMWCLQDRPEARPTMGKVAKMIEGTVEIMEPKKPTVFFLGEE 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03898 547 ProSitePatterns Protein kinases ATP-binding region signature. 233 255 IPR017441 GO:0005524
Vifa3g03898 547 Gene3D Transferase(Phosphotransferase) domain 1 304 539 - -
Vifa3g03898 547 Pfam Protein kinase domain 231 524 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03898 547 ProSiteProfiles Protein kinase domain profile. 227 531 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03898 547 ProSitePatterns Serine/Threonine protein kinases active-site signature. 370 382 IPR008271 GO:0004672|GO:0006468
Vifa3g03898 547 PANTHER OS07G0415500 PROTEIN 1 542 - -
Vifa3g03898 547 ProSiteProfiles PAN/Apple domain profile. 43 129 IPR003609 -
Vifa3g03898 547 FunFam S-receptor-like serine/threonine-protein kinase 198 301 - -
Vifa3g03898 547 CDD STKc_IRAK 233 529 - -
Vifa3g03898 547 SMART serkin_6 227 527 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03898 547 SUPERFAMILY Protein kinase-like (PK-like) 209 527 IPR011009 -
Vifa3g03898 547 Gene3D Phosphorylase Kinase; domain 1 201 301 - -
Vifa3g03898 547 FunFam Serine/threonine-protein kinase 302 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03898 Vifa-Chr3 1150748912 1150750555 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03898 142 539 Receptor kinase-like Gene Family AT4G18250 36.077 1.02e-77 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa3g03898 Pkinase 7.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03898 - - gmx:100775518 938.717