Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03896 ATGGATACACAATATTGCTTTTGGATTTCTGCTACTTTGTTTAGTTTGTTTGCAAGCTATTTTTGTGTAAACAATTTTGTATGGAGATCGAATGAGTGGTATTATAATCTCAAACAAAGAAACAAAGAGTACCCTCTACCTCCTGGTGATTTGGGATGGCCATTTATAGGGAATATGTTGACCTTTGTTAAACACTTCTCATCTGGTCATCCTGATTCATTCATCAACAACATTGTTTCTAAGTACGGACGAACCGGTATCTACAAGTCACACTTGTTTGGAAGTCCAAGCGCCATCATTTGTGATGCTGATTTAATTATGAGTGTGCTAACAGATGATGAAACATATAAGTTTAGTTATCCAAAATCAACCGTAGAAGTGCTTAAATATAAACGCTATTGGAATTTCTCTCGAAAAGAACACATGCTCTTTCGACGTATAATCTCTTCTCTTACTATGAACAACAATTCTTTAGAAAATTATCTATCAAGTATAGAGGACATCATGATCAAATCCTTGGAGGATTTTTCTAGCATGAATCATCCGATTGAGTTATTGAAAGAGATGAAGAATATTTCCTTTAAAGTTATCGTTGGTATTTTCATGGGTTCTAGTGATCAACAATTCATCACCAAGATAGGGAATTCTTTTACTCATATGCATAGTGCTTTGTTTTGTATGCCAATTAATCTTCCTGGGTTTGCTTTCCGTAGAGGACTCATTGCACGTGAGAAGCTGGCCAAGTTAGTTAAACCCATTGTAAAAGAAAGGAGGTTGATGATAAGAAATGGTGACAAAAAAAATTTACTTGATATTCTTTTACAAGTAAATGATGAAGATGGCTGGAAACCAGATGATGATGATATTATTCAAATGTTGATAGCAATGGTACTTGCTGGTCATGAAACCACTGCACATGGTATCATGTGGTCAATTATATATCTTACACAAAATCCACATATCATGAAAAAGGCTAAGGAGGAACAGGAGGAAATCATGAAGGCAAGACATGGCACAAATAAAAGATTATGTTTTGAAGAGATTAAGAAAATGGTTTATCTCTCTCAAATAATTGATGAAATGTTACGCCATATCAGTCTTACCTTTGCACTTTTTCGAGAGACAACTAGAGACGTTAACATCAATGGTTATATAATACCAAAAGGATGGAAAGTGCTTCCTTGGTTAAAAGCTATGCATAAGGATCCTACATATTATTCAAATCCAGATGAATTTAATCCATCAAGATGGAATGGTCACAATACCAAAAATGGAACCTTCATTCCTTTTGGAGTAGGAAGTAGGTTCTGCCCTGGAAATAACTTGGCCAAAATTGAAATTTATGTATTTCTACATTATTTCATTCTCAATTACAAGTTGGAACGTGTAAATCCAGATTGTCCTATTACTTGCTTACCAGCACCCATGCCCATAGACAATTGCCTTGCTAAGGTGATCAAGGTAATCGAGAGTGAAGGTTGTATACCTTTAGTAGTTCGAGTCGGTGTCATTGCTCTGATATGTAACACTCGGGGGGATGAACGCTTGTTGCTTTTGATTGTTGATTATTCAGTTGTTGAACTCTAA 1587 0.3541 MDTQYCFWISATLFSLFASYFCVNNFVWRSNEWYYNLKQRNKEYPLPPGDLGWPFIGNMLTFVKHFSSGHPDSFINNIVSKYGRTGIYKSHLFGSPSAIICDADLIMSVLTDDETYKFSYPKSTVEVLKYKRYWNFSRKEHMLFRRIISSLTMNNNSLENYLSSIEDIMIKSLEDFSSMNHPIELLKEMKNISFKVIVGIFMGSSDQQFITKIGNSFTHMHSALFCMPINLPGFAFRRGLIAREKLAKLVKPIVKERRLMIRNGDKKNLLDILLQVNDEDGWKPDDDDIIQMLIAMVLAGHETTAHGIMWSIIYLTQNPHIMKKAKEEQEEIMKARHGTNKRLCFEEIKKMVYLSQIIDEMLRHISLTFALFRETTRDVNINGYIIPKGWKVLPWLKAMHKDPTYYSNPDEFNPSRWNGHNTKNGTFIPFGVGSRFCPGNNLAKIEIYVFLHYFILNYKLERVNPDCPITCLPAPMPIDNCLAKVIKVIESEGCIPLVVRVGVIALICNTRGDERLLLLIVDYSVVEL 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03896 528 PANTHER CYTOCHROME P450 26 42 473 - -
Vifa3g03896 528 PRINTS E-class P450 group I signature 288 305 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03896 528 PRINTS E-class P450 group I signature 437 460 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03896 528 PRINTS E-class P450 group I signature 395 419 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03896 528 PRINTS E-class P450 group I signature 427 437 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03896 528 PRINTS E-class P450 group I signature 308 334 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03896 528 Pfam Cytochrome P450 47 468 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03896 528 PRINTS P450 superfamily signature 299 316 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03896 528 PRINTS P450 superfamily signature 437 448 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03896 528 PRINTS P450 superfamily signature 356 367 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03896 528 PRINTS P450 superfamily signature 428 437 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03896 528 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 430 439 IPR017972 GO:0005506|GO:0016705
Vifa3g03896 528 Gene3D Cytochrome P450 36 488 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03896 528 SUPERFAMILY Cytochrome P450 42 483 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03896 Vifa-Chr3 1150528172 1150535736 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03896 8 489 Cytochrome P450 AT2G32440 42.474 1.59e-147 431
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03896 K04123 K17875 ag:BAG68929 605.905