Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03894 ATGGATATGCAATATTGGCTCTGGTTATCAGCCATTTCATTGGGAAGCTGTTTTTATGTAAACATTTTAGTATGGAAATTGAATGAATGGTACTATAACATCAAACAAAGAAACAAGCAGTACCCTCTTCCTCCTGGTGATTTGGGGTGGCCATTTATTGGCAATATGTTGGCTTTTGTTAAAAATTTCTCGTCTGGTCACCCTGATTCATTCATCAACAACATCGTTTCTAAGTATGGAGAAAATAGTATCTACAAGACTCATTTATTTGGAAGCCCGAGCGTTATTGTTTGTGAGGCTGAAATGTGTAGACGTGTGTTGACAGATGATGAGACATTTAAAATCGGTTATCCAAAATCTACTATAGAAGTGGTGGGATGTAAACCTATTTGGAGTTTCTCTAAAGAAGAGCATAAGCGTTTTAGACGATTAATCTCATCTCTAACCATGCGACATAATACATTAGAAACATACCTAACACGTATTGAGGACATTGTGGTTAATTCTTTGGGGGAACTTTCTAGTATGAGTCACCCGGTTGAGTTTTTGAGAGAGACGAAAAATATTTCCTTTAATATCATCATTGATATATTGTTAGGCTCTTACAACCAACATATCATAAACAAAATCGGAAATTCTTTTAACGAAATGCATAGTGCTTTGTTCTCTATGCCTATTAATCTTCCCGGTTTTGCTTTTCGGAAAGGACTCATGGCACGTGAGAAGCTGGAGAAATTAGTTAAACCTATTGTGGAAGAAAGGAGGTTGATGACAAAAAATGGTGAAAGGAAAGATCTACTTGATATTCTTTTGCAAGCAAAAGATGAAGATGGTTGGAAACCAGAAGATGAGGATATTATTGACATATTGATAGGGATTGTACTTGCTGGCCATGAAGCTACAGCTAGTAGTATGATGTGGTCAATGATATATCTTACACAAAATCCACATACTTTGGAAAAGGCCAAGGAGGAGCAGGAGGAAATCATAAAGACTAGACTGCAGACACAAAAACATTTAAGTCTTAAGGATATAAAGAAAATGCGTTATCTTTCCCAGGTAATCAACGAAATGATGCGCCTTACGAGTAACAACTTTGCAATTTTTCGGGAGGCAACAATTGACGTTTACATGAATGGTTATACTATACCAAAAGGATGGAAAGTGTTAACTTGGACAAGAGCTATCCATATGGATCCTACATATTATCCAAATCCAGAAGAATTCAATCCATCTAGATGGAATAATCACAATATTAAAGTTGGATGCTTCCTTCCTTTTGGAGCTGGAAGTAGATATTGTCCTGGGAGTGATTTGGCTAAAATTGCAATTTCTATATTTCTACATTATTTCCTTCTTAGTTATAAGCTTGAGCTAGTGAATCCAAAATGTCCTATTACTAGTTTACCATCACCCAAGCCTACAGATAATTGCCTTGCTAAGGTGATAAAGGTTTCAAATATTGTATAG 1470 0.3605 MDMQYWLWLSAISLGSCFYVNILVWKLNEWYYNIKQRNKQYPLPPGDLGWPFIGNMLAFVKNFSSGHPDSFINNIVSKYGENSIYKTHLFGSPSVIVCEAEMCRRVLTDDETFKIGYPKSTIEVVGCKPIWSFSKEEHKRFRRLISSLTMRHNTLETYLTRIEDIVVNSLGELSSMSHPVEFLRETKNISFNIIIDILLGSYNQHIINKIGNSFNEMHSALFSMPINLPGFAFRKGLMAREKLEKLVKPIVEERRLMTKNGERKDLLDILLQAKDEDGWKPEDEDIIDILIGIVLAGHEATASSMMWSMIYLTQNPHTLEKAKEEQEEIIKTRLQTQKHLSLKDIKKMRYLSQVINEMMRLTSNNFAIFREATIDVYMNGYTIPKGWKVLTWTRAIHMDPTYYPNPEEFNPSRWNNHNIKVGCFLPFGAGSRYCPGSDLAKIAISIFLHYFLLSYKLELVNPKCPITSLPSPKPTDNCLAKVIKVSNIV 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03894 489 Gene3D Cytochrome P450 33 485 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03894 489 Pfam Cytochrome P450 44 469 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03894 489 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 427 436 IPR017972 GO:0005506|GO:0016705
Vifa3g03894 489 PANTHER CYTOCHROME P450 26 39 470 - -
Vifa3g03894 489 CDD CYP90-like 76 482 - -
Vifa3g03894 489 SUPERFAMILY Cytochrome P450 39 466 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03894 489 PRINTS E-class P450 group I signature 285 302 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03894 489 PRINTS E-class P450 group I signature 305 331 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03894 489 PRINTS E-class P450 group I signature 424 434 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03894 489 PRINTS E-class P450 group I signature 392 416 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03894 489 PRINTS E-class P450 group I signature 434 457 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03894 489 PRINTS P450 superfamily signature 353 364 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03894 489 PRINTS P450 superfamily signature 425 434 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03894 489 PRINTS P450 superfamily signature 296 313 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03894 489 PRINTS P450 superfamily signature 434 445 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03894 Vifa-Chr3 1149661879 1149667541 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03894 7 482 Cytochrome P450 AT1G05160 46.667 4.27e-166 476
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03894 K04123 - ag:BAG68929 631.328