Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03893 ATGGATATACAATATTGGCTGTGGTTATCTGCCATTTCACTAGCAAGTTTTTTTTGTGTAAACACTTTAGTGTGGAGAATGCATGAATTTTATTACAATCTCAAACAAAGAAACAAAGAGTTCCCTCTTCCTCCTGGTGATTTGGGATGGCCATTCATTGGCAATACGCTGGCCTTTCTTAAACACTTCTCATCTGGACATCCTGATTCATTCATCAGTAACATCGTTTCCAAATATGGACGAAATGGTATCTATAAGACTCATTTGTTTGGAAACCCTAGCGTTATAGTTTGTGAGGGTGAAATGTGTAAACGGATGTTGACAGATGATGAGACATTTAAAACCGGTTATCCAAAATCCACTATAGAAGTAGTGAGATGTAAATGTATTTGGAGTTTCTCTAAAGAAGAACACAGACGTTTTAGACGCTTAATCTCGTCTCTTACAATGGGACATAATACATTAGAAACATATTTAACACGCATCGAGGACAATGTGATAAATTCTTTGGAGGAACTTTCTAGTATGAACCACCCGGTTGAGTTTTTGAAAGAGACGAAAAATATTTCCTTTAATATTATCATTGATATTTTGTTAGGCTCTTACAATCAACATATCATAAACAAAATCGGAAATTCTTTCACTGAAATGTATAGTGTTTTGTTCTCTATGCCCATTAATCTTCCTGGTTTTGCTTTTCGCAAAGGACTCATGGCACGTGAGAAGCTGGGGAAATTAGTTAAACCTATTGTGGAAGAAAGGAGATTGATGATAAAAAATGGTGAAAGAAAAGATCTACTTGATGTTCTTTTGCAAGCAAAAGATGAAGATGGTTGGAAACCTGAGGACGAGGATATTATTGACATATTGATAGGAATTGTACTTGCTGGCCACGAAGCTACAGCTAGTGGTATGATGTGGTCAATGATATATCTTACACAAAATCCACATACTTTGGAAAAGGCCAAGAAGGAGCAGGAGGAAATCATGAAGACGAGACTGCCCACGCAGAAACATTTAAGTCTTAAAGATATCAAGAAAATGAATTATCTTTCTCAAGTAATCAACGAAATGATGCGCCTTACAAGTATGAACTTTGCAATTTTTCGAGAGGCAACAATTGACGTTAACATCAATGGTTATACTATACCGAAAGGATGGAAAGTGTTAACTTGGACAAGAGCAATACATATGGATCCTACATATTATCCAAATCCTGAAGAATTCAATCCATCTAGATGGGATGATCACAATAAAGTTGGAAGCTTCTTTCCTTTTGGAGCTGGAAGTAGATATTGTCCTGGAAGTGATTTGGCTAAAATTGAAATTTCTATATTTCTACATTATTTCCTTCTTAATTATAAGCTTGAGCTAGTGAATCCAAAATGTCCTATTACTAGTTTACCTTCACCCAAGCCCACAGATAATTGCCTTGCTAAGGTGATAAAGAATTCAAATATTGCATGA 1467 0.3572 MDIQYWLWLSAISLASFFCVNTLVWRMHEFYYNLKQRNKEFPLPPGDLGWPFIGNTLAFLKHFSSGHPDSFISNIVSKYGRNGIYKTHLFGNPSVIVCEGEMCKRMLTDDETFKTGYPKSTIEVVRCKCIWSFSKEEHRRFRRLISSLTMGHNTLETYLTRIEDNVINSLEELSSMNHPVEFLKETKNISFNIIIDILLGSYNQHIINKIGNSFTEMYSVLFSMPINLPGFAFRKGLMAREKLGKLVKPIVEERRLMIKNGERKDLLDVLLQAKDEDGWKPEDEDIIDILIGIVLAGHEATASGMMWSMIYLTQNPHTLEKAKKEQEEIMKTRLPTQKHLSLKDIKKMNYLSQVINEMMRLTSMNFAIFREATIDVNINGYTIPKGWKVLTWTRAIHMDPTYYPNPEEFNPSRWDDHNKVGSFFPFGAGSRYCPGSDLAKIEISIFLHYFLLNYKLELVNPKCPITSLPSPKPTDNCLAKVIKNSNIA 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03893 488 CDD CYP90-like 76 481 - -
Vifa3g03893 488 PRINTS P450 superfamily signature 296 313 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03893 488 PRINTS P450 superfamily signature 424 433 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03893 488 PRINTS P450 superfamily signature 353 364 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03893 488 PRINTS P450 superfamily signature 433 444 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03893 488 Gene3D Cytochrome P450 33 483 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03893 488 Pfam Cytochrome P450 44 468 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03893 488 SUPERFAMILY Cytochrome P450 39 465 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03893 488 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 426 435 IPR017972 GO:0005506|GO:0016705
Vifa3g03893 488 PRINTS E-class P450 group I signature 305 331 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03893 488 PRINTS E-class P450 group I signature 433 456 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03893 488 PRINTS E-class P450 group I signature 285 302 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03893 488 PRINTS E-class P450 group I signature 423 433 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03893 488 PRINTS E-class P450 group I signature 392 416 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03893 488 PANTHER CYTOCHROME P450 26 40 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03893 Vifa-Chr3 1149065948 1149068479 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03893 7 481 Cytochrome P450 AT1G05160 45.833 1.14e-160 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03893 K04123 K17875 ag:BAG68929 639.802