Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03892 ATGGGTTTCGGAGTTTCCTACGTTCTTCATCTTCTTTTGCTGTTTTGTACGATCTTTGGCTGTGCTTGGTCTCAAGATGGTGACGTGATGCAAAAGCTGAAAGCTTCAATCAAATCAAGCCGTAGTCTTGATTGGTCCGATTCAGATTACTGCAAATGGGAGAATGTTACATGTTCTGAATCAAGGGTCACTAGAATTGAACTCCAATCGCATAGTCTCACAGGTTCTCTACCGAAAGAATTGGTGCAACTCACTGCTTTAACTGATTTTTATTGCAGTGAGAACAATTTACATGGAGATTTTCCTAACATGCCGAATTCTCTTCAGAATTTGTATATTTACAAGAACAATTTCACGTCGATGCCGAGTGATTTCTTCGATAATATGAGTAATTTGTTAGTGGTGAGTATTGGTGATAACAGCTTTACACAGTGGGAAATTCCTATTAGTATTAAGAAATGTTTAGCCCTGAAAACTTTTTCTGCTAATAATGCTAGTTTTGTTGGTGAAATCCCTGAAATCTTTGGGAAAGAAAATTTTCCTAGTTTGGTTACTTTGCAATTGTCTTACAATTATCTTGAAGGGAATTTGCCTAATAGTTTAGCTGGTACTTCTATAGAGACCCTTTGGGTGAATGGTCAAGATAAAAGTACTAACAGACTCAATGGTACTCTTTCTGTTATTGAAAAGATGACATCTTTGAAACAGCTTTGGGTTAATGTTAATTCTTTTACTGGTCCTATACCTGATTTATCAAATCTTACTCAATTGACAGATGTTTGTTTTAGGGATAATAGATTAACTGGTGTTGTTCCGCCGACTTTGACTTCTCTTCCTAGTTTGAAAGTTGTTAACTTGACAAACAATCAACTTCAAGGGTCACCTCCTAAGTTTCAAAATGGTGTTACGGTTGATAATGATTTGAGTGGGACTAATAGTTTTTGTACTGAGGGTGCTGGTCAGCCATGTAGTCCACTTGTTAATGCTTTGCTTTCTGTTGTTGAACCTCTTGGATATCCTTATATACTTGCTCAGACTTGGAAAGGGAATGACCCTTGTGGTGGTAATACTTGGAAAGGGGTTGTTTGTTCTGGAGGTAATATTTCAATTATCGACTTTCGTAACCTGGGTTTTTCTGGTAGTGTATCTCCTAGTTTTGCAAGCCTTAGTTCTGTGACGAAGTTGCTTCTTTCTAACAATAATCTCACCGGTACTATACCTAACGAGCTTGCTAATATGCCGGCTTTGAAAGAGATAGATGTTTCAAATAATTCGTTGTATGGTCAGATACCGAAGTTCCGTGGAGACGTGGTTGTTAATACTGATGGGAATCCTGATATTGGACATGATAAACCTTCTAGCCCGCCTAGTCCTAGTTCTGGAGGGAACGATAAGAAGAAATTTAGTGTTGGAGCTATTGTTGGTGTTGTGATTGGGGTTGTTTGTTTACTTGGTGTAGGGGTTTTGGTATTTGTTATGTGCCGTAGAAGATATAATAAGCGTAATGGCAAAGTTCAAACTCCAAATGCAATAGTGATACATCCTCGTCATTCTGGAGATGGAAATGCTGTGAAGATAAGTGTTGCAGCAGCGGGAGGATCTCATGCTGGTGGTGTGGGAGGAACCAGTGGATTTAGTCAATCAAGTAGTGTTCAAAATGTGGAAGCTGGTAATATGGTGATTTCTATTCAAGTTTTGAGAGAAGTTACGAACAATTTCAGCGAAAAAAACATATTGGGGAAGGGTGGTTTTGGCACTGTATACAAAGGAGAATTGGATGATGGAACAAAGATTGCAGTTAAAAGGATGCAATCTGATATGGGTGGTGACAAAGGGCTGAATGAGTTCAAGTCTGAAATTGCGGTTCTTACTAAGGTTCGACACAGGCATTTGGTTGCACTTCTTGGCTATTGCTTGGATGACAATGAGAAACTTCTTGTCTATGAATACATGCCTCAGGGCACTCTTAGTGAACATCTGTTCGACCGGAAAGACGATGGGGTAAAACCACTAGAATGGAAGAGAAGGCTTTCTATTGCCTTAGATGTTGCTAGAGGTGTTGAATATCTTCATGGTTTGGCACAACAAATTTTCATCCATAGGGATTTAAAACCGTCAAATATCCTTCTTGGGGATGATATGCGCGCTAAAGTATCCGATTTTGGACTGGTTCGGCTTGCTCCTGAAGGACAAGCGTCATTCGAGACTAGACTTGCCGGAACTTTTGGATATCTAGCACCTGAGTATGCAGTCACCGGACGAGTCACCACAAAGGTTGACGTATACAGCTATGGCGTGATTCTTATGGAGATGATTACAGGAAGGAGAGCAATCGACAACAGCCAACCAGACGAGAACATCCACCTTGTTACATGGTTCCGCAGGATGCAACTGAACAAAGACTCGTTCCAGAAGATCATTGATCCAGCAATGGATATCGATGAGGAAGGTTTGGAGAGTTTTAGGACTATTGCAGGGTTGGCCAGCCACTGTTGTGCAAGGGAGCCTCATCAGCGTCCTGACATGGGACATGTGGTGAATGCGCTAGCACCTCTTGTTGAGGTTTGGAAGCCGTCTGAACCTGATGCTGAGGACATGTACGGGATTGACTTGGATATGAGTTTGCCTCAAGCTCTAAGTAAGTGGCAGAATATGGAAGGGCAAAGCACTACACTCGATGTTTCGTATTCTTCGATGATTCCTAGTTGTGAGAATACACAGTCGAGTATACCGCCCCGGTCTCCTGGATTCGCTGATTCTTTTACATCTGCTGATGCGCGATGA 2784 0.4113 MGFGVSYVLHLLLLFCTIFGCAWSQDGDVMQKLKASIKSSRSLDWSDSDYCKWENVTCSESRVTRIELQSHSLTGSLPKELVQLTALTDFYCSENNLHGDFPNMPNSLQNLYIYKNNFTSMPSDFFDNMSNLLVVSIGDNSFTQWEIPISIKKCLALKTFSANNASFVGEIPEIFGKENFPSLVTLQLSYNYLEGNLPNSLAGTSIETLWVNGQDKSTNRLNGTLSVIEKMTSLKQLWVNVNSFTGPIPDLSNLTQLTDVCFRDNRLTGVVPPTLTSLPSLKVVNLTNNQLQGSPPKFQNGVTVDNDLSGTNSFCTEGAGQPCSPLVNALLSVVEPLGYPYILAQTWKGNDPCGGNTWKGVVCSGGNISIIDFRNLGFSGSVSPSFASLSSVTKLLLSNNNLTGTIPNELANMPALKEIDVSNNSLYGQIPKFRGDVVVNTDGNPDIGHDKPSSPPSPSSGGNDKKKFSVGAIVGVVIGVVCLLGVGVLVFVMCRRRYNKRNGKVQTPNAIVIHPRHSGDGNAVKISVAAAGGSHAGGVGGTSGFSQSSSVQNVEAGNMVISIQVLREVTNNFSEKNILGKGGFGTVYKGELDDGTKIAVKRMQSDMGGDKGLNEFKSEIAVLTKVRHRHLVALLGYCLDDNEKLLVYEYMPQGTLSEHLFDRKDDGVKPLEWKRRLSIALDVARGVEYLHGLAQQIFIHRDLKPSNILLGDDMRAKVSDFGLVRLAPEGQASFETRLAGTFGYLAPEYAVTGRVTTKVDVYSYGVILMEMITGRRAIDNSQPDENIHLVTWFRRMQLNKDSFQKIIDPAMDIDEEGLESFRTIAGLASHCCAREPHQRPDMGHVVNALAPLVEVWKPSEPDAEDMYGIDLDMSLPQALSKWQNMEGQSTTLDVSYSSMIPSCENTQSSIPPRSPGFADSFTSADAR 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03892 927 ProSitePatterns Protein kinases ATP-binding region signature. 579 601 IPR017441 GO:0005524
Vifa3g03892 927 CDD STKc_IRAK 579 852 - -
Vifa3g03892 927 ProSitePatterns Serine/Threonine protein kinases active-site signature. 698 710 IPR008271 GO:0004672|GO:0006468
Vifa3g03892 927 PANTHER OSJNBA0070M12.3 PROTEIN 10 927 - -
Vifa3g03892 927 Gene3D Phosphorylase Kinase; domain 1 540 650 - -
Vifa3g03892 927 Gene3D Transferase(Phosphotransferase) domain 1 651 866 - -
Vifa3g03892 927 SMART serkin_6 573 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03892 927 Pfam Leucine Rich repeats (2 copies) 391 430 IPR025875 -
Vifa3g03892 927 FunFam Receptor-like kinase TMK4 24 320 - -
Vifa3g03892 927 Gene3D Ribonuclease Inhibitor 23 321 IPR032675 -
Vifa3g03892 927 FunFam receptor protein kinase TMK1 539 650 - -
Vifa3g03892 927 Gene3D Ribonuclease Inhibitor 326 451 IPR032675 -
Vifa3g03892 927 SUPERFAMILY Protein kinase-like (PK-like) 561 876 IPR011009 -
Vifa3g03892 927 SMART LRR_typ_2 180 203 IPR003591 -
Vifa3g03892 927 SMART LRR_typ_2 389 413 IPR003591 -
Vifa3g03892 927 SMART LRR_typ_2 278 300 IPR003591 -
Vifa3g03892 927 SMART LRR_typ_2 104 128 IPR003591 -
Vifa3g03892 927 Pfam Leucine rich repeat N-terminal domain 25 59 IPR013210 -
Vifa3g03892 927 Pfam Leucine rich repeat N-terminal domain 345 364 IPR013210 -
Vifa3g03892 927 FunFam receptor protein kinase TMK1 651 868 - -
Vifa3g03892 927 Coils Coil 921 927 - -
Vifa3g03892 927 MobiDBLite consensus disorder prediction 441 464 - -
Vifa3g03892 927 SUPERFAMILY L domain-like 36 433 - -
Vifa3g03892 927 Pfam Protein kinase domain 574 847 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03892 927 ProSiteProfiles Protein kinase domain profile. 573 853 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03892 927 MobiDBLite consensus disorder prediction 903 927 - -
Vifa3g03892 927 FunFam Leucine-rich repeat receptor-like kinase 325 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03892 Vifa-Chr3 1148616721 1148620159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03892 66 870 Receptor kinase-like Gene Family AT1G55610 30.917 3.13e-87 301
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Vifa3g03892 Pkinase 8.2e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03892 - K00924 gmx:100776064 1212.98