Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03889 ATGAATTTCGAAGGCCGTTTAGGTGTGGTTGGTTCGATGGATGTTAATATCGGGGAGGCTTTCTTGGAGCTTCTTTCAAATTCATACAATGATCCTAGAAAACGTAATCCATGGTATCCTGCCGTAGCTGCAATGGTAAGTGGTGACATGTCATATTTCTATGGCGTTGGCTTCTTAGGTTTTCAAGACACTTTGTGGGATGATGCTGGAAGACATTACTTCCATAATTGTTTCATTGAAGGTGCTGTTGATTTCATATTTGGTGCAGGCCAGTCTTTATACGAGGGTTGTACGATTTCGGTTATTGCGGCTTCATTAGGACCAGGAGTACCTGGAGTTATAACAGCACAAGGCAGAACAAATCCTAATGATGCAAATGGTTTTGTTTTTAAGCATTGTAAGATATATGGAATTGGTACAACATATTTGGGAAGACCATGGAGAGCTTATGCTAGGGTTTTTTTCTACAATAGCAATATGTCTAATATTGTTCACCCTCTTGGTTGGGATCCATGGAATTTTGTTGGACACGAGGATCGTATTCAATTCTCAGAGTATTTAAATTATGGAGATGGTTCTATCACAAACTATAGAGTGAAATGGACTAAGAATTTGGATATGCAAACTATTAATACAATGGCAAGTCTTAGTTTTATTAATAATGATGGATGGCTTCAAAATCAACCGTTATAA 693 0.3781 MNFEGRLGVVGSMDVNIGEAFLELLSNSYNDPRKRNPWYPAVAAMVSGDMSYFYGVGFLGFQDTLWDDAGRHYFHNCFIEGAVDFIFGAGQSLYEGCTISVIAASLGPGVPGVITAQGRTNPNDANGFVFKHCKIYGIGTTYLGRPWRAYARVFFYNSNMSNIVHPLGWDPWNFVGHEDRIQFSEYLNYGDGSITNYRVKWTKNLDMQTINTMASLSFINNDGWLQNQPL 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03889 230 ProSitePatterns Pectinesterase signature 2. 79 88 IPR033131 -
Vifa3g03889 230 Gene3D - 22 230 IPR012334 -
Vifa3g03889 230 SUPERFAMILY Pectin lyase-like 35 226 IPR011050 -
Vifa3g03889 230 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 40 226 - -
Vifa3g03889 230 Pfam Pectinesterase 40 220 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03889 Vifa-Chr3 1148145571 1148147371 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03889 32 226 Carbohydrate Esterase AT1G05310 40.909 2.56e-49 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03889 - - aprc:113870328 313.538