Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03863 ATGACTATGGATGAAGGGGATAGTAGCTCTGAGTGGAGCAGGGAGCAAGATAAAGCGTTTGAAAATGCTTTGGCAACTTATCCCGAGGACGCTTCGGATCGATGGGAAAAGATTGCGGCTGATGTACCAGGGAAGACTATGGAAGAAATTACTCAGCATTATGAGCTCTTGGTTGATGATGTTGGCCAAATTGAAGCTGGTTGTGTTCCGATACCGTCGTATAATTCTTCTTCCGAGGGATCGACAAGTCATGCTAGCGATGAAGGAGTTGGAGGGAAGAAGGGTGGTGGCCATAATGGTCACAATAACGAATCTAACCATGGAACTAAGGCTTCGAGATCGGATCAAGAACGGCGAAAGGGTATTGCTTGGACTGAAGAAGAACACAGGTTATTCCTTCTGGGCCTAGACAAGTACGGAAAAGGTGACTGGCGAAGTATATCAAGAAACTTTGTGGTTACTCGAACACCAACCCAAGTAGCAAGCCACGCGCAAAAATACTTCATCCGATTGAACTCAATGAACAAAGACAGAAGGCGATCAAGCATACATGATATCACTAGCGTCAACAACGGAGATGTCTCAACGCCTCAAGGACCAATCACCGGTCAAACAAACGGTTCCTCTGGAAACCCCGCAAACAAATCAGTCAAACAAGCCGTTCCATCCACAACCGGTATACCAGGCGCCGGAATATATGCTGCTCCTTCCATCGGACAACCTATCGGAGGACCTTTAGTATCTGCTGTTGGCACTCCGGTGAACCTATCTGGATCTCCACATATTGCATACGGTATTCGAGCACCGGTTCCCGGTACCGTTGTACCCGGTGCACCTATGAACATGGTCCCTATGTCATACCCCATGCCTCATACTTCTGGTCCTCACAGGTGA 894 0.4787 MTMDEGDSSSEWSREQDKAFENALATYPEDASDRWEKIAADVPGKTMEEITQHYELLVDDVGQIEAGCVPIPSYNSSSEGSTSHASDEGVGGKKGGGHNGHNNESNHGTKASRSDQERRKGIAWTEEEHRLFLLGLDKYGKGDWRSISRNFVVTRTPTQVASHAQKYFIRLNSMNKDRRRSSIHDITSVNNGDVSTPQGPITGQTNGSSGNPANKSVKQAVPSTTGIPGAGIYAAPSIGQPIGGPLVSAVGTPVNLSGSPHIAYGIRAPVPGTVVPGAPMNMVPMSYPMPHTSGPHR 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03863 297 ProSiteProfiles SANT domain profile. 124 172 IPR017884 -
Vifa3g03863 297 SUPERFAMILY Homeodomain-like 10 64 IPR009057 -
Vifa3g03863 297 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 7 208 IPR043363 -
Vifa3g03863 297 FunFam Transcription factor SRM1 4 71 - -
Vifa3g03863 297 CDD SANT 11 58 IPR001005 -
Vifa3g03863 297 ProSiteProfiles Myb-like domain profile. 4 58 IPR001005 -
Vifa3g03863 297 MobiDBLite consensus disorder prediction 185 221 - -
Vifa3g03863 297 MobiDBLite consensus disorder prediction 1 34 - -
Vifa3g03863 297 SUPERFAMILY Homeodomain-like 118 173 IPR009057 -
Vifa3g03863 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 115 172 IPR017930 -
Vifa3g03863 297 FunFam transcription factor MYB1R1 122 173 - -
Vifa3g03863 297 NCBIfam myb-like DNA-binding domain, SHAQKYF class 120 170 IPR006447 GO:0003677
Vifa3g03863 297 CDD SANT 123 168 IPR001005 -
Vifa3g03863 297 SMART sant 120 170 IPR001005 -
Vifa3g03863 297 SMART sant 8 60 IPR001005 -
Vifa3g03863 297 Gene3D - 122 174 - -
Vifa3g03863 297 ProSiteProfiles Myb-like domain profile. 116 168 IPR001005 -
Vifa3g03863 297 Pfam Myb-like DNA-binding domain 123 168 IPR001005 -
Vifa3g03863 297 Pfam Myb-like DNA-binding domain 10 54 IPR001005 -
Vifa3g03863 297 MobiDBLite consensus disorder prediction 72 120 - -
Vifa3g03863 297 Gene3D - 10 57 - -
Vifa3g03863 297 MobiDBLite consensus disorder prediction 178 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03863 Vifa-Chr3 1137663170 1137667018 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa3g03863 Myb_DNA-binding 1.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03863 - - ccaj:109792793 496.893