Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03852 ATGAATTCTTCTTCTAGGAACACTGTTGGGCCAGGAGGAATGGGAATGGATATACCGATTATGCATGAGAGTGATAGGTATGAGCTTGTTCGTGATATTGGGTCTGGGAATTTTGGGGTGGCTAGGCTTATGAGAGATAAACTCACTAATCAACGTGTTGCTGTCAAGTATATTGAGAGAGGTGATAAGATTGATGAAAATGTACAGAAGGAAATTATAAATCATAGATCACTAAGGCATCCTAATATTGTCAGATTCAAGGAGGTGATACTTACCCCTACACATTTAGCTATTGTGATGGAATATGCTTCTGGAGGAGAGCTATTTGAGCGAATATGCAATGCAGGACGGTTCAGCGAGGATGAGGCACGGTTTTTCTTTCAACAACTTATATCAGGGGTTAGCTACTGTCATGCAATGCAAGTATGTCATCGTGACTTGAAGTTGGAGAACACGTTGTTGGATGGTAGTCCGGCTCCTCGTTTGAAGATTTGTGATTTTGGGTATTCAAAGTCATCAGTGCTACATTCACAACCAAAATCTACCGTCGGTACACCTGCATATATCGCTCCTGAAGTTTTGCTTAAGAAGGAATATGATGGCAAGATTGCAGATGTATGGTCTTGTGGTGTTACCTTATATGTCATGTTAGTGGGCGCATATCCTTTCGAGGATCCGGAGGAGCCTAAAAATTTCCGGAAGACTATTCATAGGATTTTGAAAGTCCAATACTCAATTCCTGATTATGTCCAAATATCTCCCGAGTGCCATCATCTGATCTCAAGGATCTTCGTTGCAGACCCTGCACAGAGAATAAGTATGTCTGAGATTCGAAACCACGTGTGGTTTTTGAAGAACCTTCCAGCCGATCTTATAGTTGGAAATACAATGAACGACCAGTTTCAAGAGCCTGAACAACCGATGCAGACCGTTGAAGAAATCATGCAGATAATTAGTGAAGCTACTATTCCTGCAGCTGGAACTCATCAGTCTCTCAACCAGTATCTTACCGGTAGTTTGGACATCGATGATGAAATGGACGAGGATGTGGAAACTGATCCCGACCTTGATATCGATAGCAGTGGTGAGATAGTTTATGCAATGTAA 1107 0.4182 MNSSSRNTVGPGGMGMDIPIMHESDRYELVRDIGSGNFGVARLMRDKLTNQRVAVKYIERGDKIDENVQKEIINHRSLRHPNIVRFKEVILTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLKKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPKNFRKTIHRILKVQYSIPDYVQISPECHHLISRIFVADPAQRISMSEIRNHVWFLKNLPADLIVGNTMNDQFQEPEQPMQTVEEIMQIISEATIPAAGTHQSLNQYLTGSLDIDDEMDEDVETDPDLDIDSSGEIVYAM 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03852 368 ProSiteProfiles Protein kinase domain profile. 27 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03852 368 SUPERFAMILY Protein kinase-like (PK-like) 19 313 IPR011009 -
Vifa3g03852 368 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
Vifa3g03852 368 FunFam Serine/threonine-protein kinase SRK2E 103 291 - -
Vifa3g03852 368 Gene3D Phosphorylase Kinase; domain 1 10 102 - -
Vifa3g03852 368 PANTHER SERINE/THREONINE KINASE 26 312 - -
Vifa3g03852 368 FunFam Serine/threonine-protein kinase SRK2E 16 102 - -
Vifa3g03852 368 Gene3D Transferase(Phosphotransferase) domain 1 103 291 - -
Vifa3g03852 368 Pfam Protein kinase domain 27 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03852 368 SMART serkin_6 27 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03852 368 ProSitePatterns Protein kinases ATP-binding region signature. 33 56 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03852 Vifa-Chr3 1134848156 1134850430 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03852 20 306 CBL-interacting serine-threonine protein kinases AT4G24400 41.196 1.17e-67 217
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Vifa3g03852 Pkinase 2.9e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03852 K14498 - gmx:100804702 668.307