Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03841 ATGGCTCCTCGCCCTACTTTTTGCAAACTTATTCTTCCAACAACCCTTCAATCTAGGCAATTGAGGATTCCGGATAATTTTCTGAGAAAGCATGGGGCCCAACTTTCGACTGCTGCCACCATCTCTGTTCCCGATGGCACCGTTTGGCGTCTAGGATTGAAAAAGGCCGACAACAAACTTTGGTTTGTCGATGGTTGGCAAGATTTTGTTCAACGCTACTCCATTGGCATTGGATACTTTCTAGTATTCACGTACGAAGGGAATTCGTGTTTCGTCATTCATATCTTTAACATGGGTAGTGCGGAGTTAAACTATCAATCCGCCATGAGGGGCCGTAACGAAGGGCCTTGCTATTCAAATTATCATCCTCTTTTTAACGAAATGGAAGATGCCGACTCCCTTGAGTTTCTGGGTTCGTCACCTTCAAACCTTACTTCTGGTGTATTGCAAGAGAAGGTTTTTCCTGGATCTGTGGATCATTTAACACCGGGGAAGAATCATACTCCATCATTGCATAATCTGTTTAACGGCGGGTCTAAACTCAACCGCGTTAACTGGGGAGATATTGATGGTACTCTTTCTTCAAAGGTTGCCATTCAATCAACCAGAGATATAGGTGTTCAGTTCAATGCTAGTGAGTTCAAAAAGTCTACAGAAGAAGTGAAAATCCGCTATTCTAACGAGGAAGGGCTTAATAGTAGTGATATTAAAAAATCTTCAAGAAAGAAGCGGAAATCAGATCTGAGTGCACAGGAAGGCTCTTCAGCTGAAAATGAGGAGGACGCAGATTCGCGCTATCGATTCTATGAAAGTGCATCTGCAAGAAAAAGAACCGTGACAGCAGAAGAAAGAGAAAGGGCAATAAATGAATCAAAAGCATTTGAACCAACTAATCCTTTCTGTCGAGTTGTGCTGCGACCCTCTTATTTATATAGGGGATGTATAATGTATCTGCCTTCCTCCTTTGCAGAGAACAATTTGAACGAGGTTTCAGGATTCATTAAACTTCTGGGCCCAACCGGGAAAGAATTTCCTGTTCGCTGTCTTTATAGAGGTGGCCGAGCAAAGTTGAGCCAAGGATGGTATGAATTTACAGTAGACAACAATTTAGGGGAAGGCGACGTCTGTGTTTTTGAGCTGCTTAGAAGCCGAGAGGTAGTGCTGAAAGTTACTCTGTTTCATGTACGCGAGGATGAATCAGGGTTATTCGACCCTTCTACGCAGTTGAGCCAAAACGTGAGCCATGCAAAACTGCTGAACCCTCACTTGCAGCACCGTGTCAGCACCACCAAACCGGTTATAGCAGCGGGGAGAATTAACTCCTCCTGA 1329 0.4394 MAPRPTFCKLILPTTLQSRQLRIPDNFLRKHGAQLSTAATISVPDGTVWRLGLKKADNKLWFVDGWQDFVQRYSIGIGYFLVFTYEGNSCFVIHIFNMGSAELNYQSAMRGRNEGPCYSNYHPLFNEMEDADSLEFLGSSPSNLTSGVLQEKVFPGSVDHLTPGKNHTPSLHNLFNGGSKLNRVNWGDIDGTLSSKVAIQSTRDIGVQFNASEFKKSTEEVKIRYSNEEGLNSSDIKKSSRKKRKSDLSAQEGSSAENEEDADSRYRFYESASARKRTVTAEERERAINESKAFEPTNPFCRVVLRPSYLYRGCIMYLPSSFAENNLNEVSGFIKLLGPTGKEFPVRCLYRGGRAKLSQGWYEFTVDNNLGEGDVCVFELLRSREVVLKVTLFHVREDESGLFDPSTQLSQNVSHAKLLNPHLQHRVSTTKPVIAAGRINSS 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03841 442 SMART B3_2 301 396 IPR003340 GO:0003677
Vifa3g03841 442 SMART B3_2 7 99 IPR003340 GO:0003677
Vifa3g03841 442 MobiDBLite consensus disorder prediction 234 250 - -
Vifa3g03841 442 MobiDBLite consensus disorder prediction 232 262 - -
Vifa3g03841 442 CDD B3_DNA 299 393 IPR003340 GO:0003677
Vifa3g03841 442 ProSiteProfiles B3 DNA-binding domain profile. 6 99 IPR003340 GO:0003677
Vifa3g03841 442 SUPERFAMILY DNA-binding pseudobarrel domain 4 98 IPR015300 -
Vifa3g03841 442 Gene3D - 278 398 IPR015300 -
Vifa3g03841 442 SUPERFAMILY DNA-binding pseudobarrel domain 294 393 IPR015300 -
Vifa3g03841 442 ProSiteProfiles B3 DNA-binding domain profile. 301 396 IPR003340 GO:0003677
Vifa3g03841 442 Gene3D - 2 99 IPR015300 -
Vifa3g03841 442 CDD B3_DNA 5 97 IPR003340 GO:0003677
Vifa3g03841 442 PANTHER B3 DOMAIN-CONTAINING 4 385 - -
Vifa3g03841 442 Pfam B3 DNA binding domain 13 97 IPR003340 GO:0003677
Vifa3g03841 442 Pfam B3 DNA binding domain 304 393 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03841 Vifa-Chr3 1130027951 1130031876 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03841 3 397 B3 DNA Binding Superfamily AT3G18990 47.848 9.01e-118 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa3g03841 B3 1.6e-16 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03841 3 1130027951 1130031876 Vifa3g03841 3 1130027951 1130031876 ECH