Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03825 ATGGATTCTCACACTTTTGAGTTATTAGCCCTTGTCTCCTTTTTCCTCTTGATTCTTGTGGCACTGAAAATTGGGAGGAATCTTAAGAAACAAGGGTCATCTCCAAACCTACCCCCAGGACCATGGAAGCTACCTATTATAGGACACATACATCATCTAGTTACCTCTACACCACATAGAAAATTAAGAGACTTGGCCAAAATACATGGACCCTTGATGCAACTACAACTTGGAGAGATCTTTGCAATTGTTGTTTCCTCACCAGATTATGCTAGGGAAGTACTTAAAACCCATGATGTCATATTTGCATCAAGGCCTAAAATTGTAGCTATGGAAATAATATCATATAGATGCACAGATATTGCATTTTCACCTTATGGAAATTATTGGAGACTGTTGCGAAAGATATGCAAAATGGAGCTTTTAACACAAAAACGTGTGACTTCATTCCGGCCAATAAGAGAAGAAGTGCTCATGAATCTCATCAAAAAGATTGATTCACAACAAGGGTTATCCATCAACATCACTCAACATGTGGTTTCGTCGACTTTTGCTATCATTACAAAGGCTGCATTTGGCATCAACTGTAAAGTCCAAGAAGAGCTTGCGTCTTTGGGGAATGGAGAATCGGTTGGAGGAGGTTTTGACATAGCTGATCTGTTTCCCTCGGCTAAATGGCTTCAACTTGTTTCTGGTTTGAGGTCGAAAGTTGAGAGGCTGCATAGACGAATTGATGAGTTACTAGAAAAAGTCATCATTGAACATATAGAAGCCAAGTCAAGAGCAAAAGAAGGCCATGGTGAAGCAGAAGAAGATCTAGTAAATGTTCTTCTAAATTTCCACGGTGATAATGATAGTGACCAAGATATATGCTTAACTTACAACAATATCAAGGCTATAATCCTGGACATCTTTGGTGCTGGAGGTGAAACATCAGCTTCTACCATAGTTTGGGCAATGTCAGAGTTGATAAAGGATCCAAGAGTGATGAAGAAAGCACAAGATGAAGTGAGAGAAATATTCAACATGAGAGGAAATGTTGGTGAAAGCTGCATAAACGAACTCGAATATTTGAAGTCCATTGTGAAAGAGACGTTAAGATTACACCCTCCAGCTCCTCTCTTAATTCCAAGAGAATGCGGAGAAGCATGTGAGATCGATGGATTTCATATACCAATCAAAACGAAAGTGATAGTTAACGCGTGGGCAATCGGAAGAGATCCAAAGTACTGGATCGAACCAGAGAGATTCTATCCAGAGAGATTCATTGGTAGCTGTATTGACTACAAAGGGAGTAATTTTGAGTACATTCCTTTTGGTGCTGGAAGAAGAATGTGCCCGGGCATCACATTCGGTTTGATAAATGTTGAGCTAGCCCTTGCATTATTGTTGTATCACTTTGATTGGAAGCTTCCCAATGGAATGAAAGGTGAGGATTTGGACATGACTGAGCAATTTGGAGCTAGCATCAAAAGAAAACATGACTTGTACTTGATACCCACTGCTCCTCTTCCTTCTGTGGTTAGATAA 1530 0.3987 MDSHTFELLALVSFFLLILVALKIGRNLKKQGSSPNLPPGPWKLPIIGHIHHLVTSTPHRKLRDLAKIHGPLMQLQLGEIFAIVVSSPDYAREVLKTHDVIFASRPKIVAMEIISYRCTDIAFSPYGNYWRLLRKICKMELLTQKRVTSFRPIREEVLMNLIKKIDSQQGLSINITQHVVSSTFAIITKAAFGINCKVQEELASLGNGESVGGGFDIADLFPSAKWLQLVSGLRSKVERLHRRIDELLEKVIIEHIEAKSRAKEGHGEAEEDLVNVLLNFHGDNDSDQDICLTYNNIKAIILDIFGAGGETSASTIVWAMSELIKDPRVMKKAQDEVREIFNMRGNVGESCINELEYLKSIVKETLRLHPPAPLLIPRECGEACEIDGFHIPIKTKVIVNAWAIGRDPKYWIEPERFYPERFIGSCIDYKGSNFEYIPFGAGRRMCPGITFGLINVELALALLLYHFDWKLPNGMKGEDLDMTEQFGASIKRKHDLYLIPTAPLPSVVR 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03825 509 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 439 448 IPR017972 GO:0005506|GO:0016705
Vifa3g03825 509 SUPERFAMILY Cytochrome P450 38 501 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03825 509 PRINTS E-class P450 group I signature 436 446 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03825 509 PRINTS E-class P450 group I signature 296 313 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03825 509 PRINTS E-class P450 group I signature 90 111 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03825 509 PRINTS E-class P450 group I signature 400 424 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03825 509 PRINTS E-class P450 group I signature 446 469 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03825 509 PRINTS E-class P450 group I signature 66 85 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03825 509 PRINTS E-class P450 group I signature 316 342 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03825 509 PRINTS E-class P450 group I signature 359 377 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03825 509 PANTHER CYTOCHROME P450 71B11-RELATED 17 501 - -
Vifa3g03825 509 Coils Coil 230 250 - -
Vifa3g03825 509 PRINTS P450 superfamily signature 360 371 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03825 509 PRINTS P450 superfamily signature 307 324 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03825 509 PRINTS P450 superfamily signature 437 446 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03825 509 FunFam Cytochrome P450 71D8 30 500 - -
Vifa3g03825 509 CDD CYP71-like 69 496 - -
Vifa3g03825 509 Gene3D Cytochrome P450 30 497 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa3g03825 509 Pfam Cytochrome P450 38 487 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03825 Vifa-Chr3 1123800502 1123802287 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03825 8 501 Cytochrome P450 AT3G26300 41.454 2.33e-130 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03825 - - gmx:100801936 730.324