Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03824 ATGGCGGAACACCTAGCATCAATATTCGGCACAGAGAAAGACCGAGTTAACTGTCCATTCTACTTCAAGATCGGCGCGTGTAGACACGGCGACCGTTGTTCCCGTCTCCACAACCGTCCCACCATTTCACCGACTCTCCTTCTCTCCAACATGTACCAACGCCCCGATATCATCACTCCCGGCGTCGATCCCAACGGTCAACCGATCGATCCGCGTCAGATCCAGCAGCACTTCGAAGATTTCTACGAGGATATCTTTCTAGAACTTTCTAAATTCGGTTACATCGAAACGCTGAACGTTTGTGATAATCTGGCTGATCATATGATCGGTAATGTTTACGTTCTGTTTCGCGAGGAAGATCATGCTGCGGCTGCGCTTGCTTCGTTGCACGGGAGATTTTACTCCGGTCGCCCTATTCTTGCGGATTTTTCTCCGGTGACGGATTTCCGTGAGGCCACTTGTCGGCAGTATGAGGAGAATAGCTGTAACCGTGGTGGTTATTGTAATTTTATGCATGTTAAGAAAATTGGAAGGGAATTGAGGAGGAAACTGTTTTCTTCTCAACGGAGCCGGAGCAGAAGCAGAAGTCGGAGTAATAGTCCTCGCCGGAGAAGGAGAAGCGGCGATCGAGAGAGGCCGCGTGATAGGGATAGAGATTATGATTCTCGTGGAAGAAGTAGTGATAGGGATAGAAATAGGGATAGGGATAGGGATAGGGATAGGTATAGGGATGGGGATAGGGAGAGGAATAGAGATAGTAGGGATGAAGGAGGGAGGCGAAGAAATGGTAGTTCGGCGAGGGAAGGGAGTGAGGAAAGGCGAGCGAGGATCGAGCAATGGAATAGGGAAAGAGAGGAGAAACCTTGA 867 0.4948 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDIITPGVDPNGQPIDPRQIQQHFEDFYEDIFLELSKFGYIETLNVCDNLADHMIGNVYVLFREEDHAAAALASLHGRFYSGRPILADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKKIGRELRRKLFSSQRSRSRSRSRSNSPRRRRRSGDRERPRDRDRDYDSRGRSSDRDRNRDRDRDRDRYRDGDRERNRDSRDEGGRRRNGSSAREGSEERRARIEQWNREREEKP 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03824 288 SUPERFAMILY RNA-binding domain, RBD 77 149 IPR035979 GO:0003676
Vifa3g03824 288 PRINTS U2 auxiliary factor small subunit signature 103 125 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vifa3g03824 288 PRINTS U2 auxiliary factor small subunit signature 165 177 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vifa3g03824 288 PRINTS U2 auxiliary factor small subunit signature 18 37 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vifa3g03824 288 PRINTS U2 auxiliary factor small subunit signature 130 154 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vifa3g03824 288 PRINTS U2 auxiliary factor small subunit signature 37 57 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vifa3g03824 288 PRINTS U2 auxiliary factor small subunit signature 75 90 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vifa3g03824 288 SMART rrm2_1 72 142 IPR003954 GO:0003676
Vifa3g03824 288 MobiDBLite consensus disorder prediction 204 288 - -
Vifa3g03824 288 ProSiteProfiles Zinc finger C3H1-type profile. 148 175 IPR000571 GO:0046872
Vifa3g03824 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 44 146 IPR000504 GO:0003723
Vifa3g03824 288 ProSiteProfiles Zinc finger C3H1-type profile. 12 40 IPR000571 GO:0046872
Vifa3g03824 288 Gene3D - 43 145 IPR012677 -
Vifa3g03824 288 FunFam Splicing factor U2AF small subunit 45 145 - -
Vifa3g03824 288 PANTHER U2 SNRNP AUXILIARY FACTOR, SMALL SUBUNIT 1 275 IPR009145 GO:0000398|GO:0003723|GO:0089701
Vifa3g03824 288 SMART c3hfinal6 148 174 IPR000571 GO:0046872
Vifa3g03824 288 SMART c3hfinal6 13 39 IPR000571 GO:0046872
Vifa3g03824 288 MobiDBLite consensus disorder prediction 183 288 - -
Vifa3g03824 288 CDD RRM_U2AF35B 44 145 - -
Vifa3g03824 288 MobiDBLite consensus disorder prediction 187 203 - -
Vifa3g03824 288 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 14 38 IPR000571 GO:0046872
Vifa3g03824 288 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 150 173 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03824 Vifa-Chr3 1123348884 1123349750 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa3g03824 zf-CCCH 9.3e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03824 K12836 - pop:7474543 379.793