Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03819 ATGGAAAAGGTAGCTCCTCCTCTTCTTCCTCTTCCACATCCATTTTACGATTCATCAAATAACAAAAAACGCGATCTATCATACGACGTCGTTCACCTACCAAACGACAATTGGAACCCTAAAGAATGGAATTGGGACAGCGTTCGATTCATGGCAAAATCTACCGTCTCACAGCAACTGCAGCAACCGGAGGAAGCTCTCAAATTGAATCTCTCCGGCGGTGGTTTTACCGGCGGAGGTGTTACAAATAGAGCTAATAAAAGAGTACGTTCAGGATCTCCATCTGGAACGGCAACGGCGTCGGCGTCGGCGGCATCGTATCCGATGTGTCAAGTTGATAACTGTAAAGAAGATCTGTCGAAAGCGAAGGACTATCATCGGAGGCATAAAGTGTGTGAAGCTCATAGTAAAGCTTCGAAGGCGTTGCTTGGGAATCAAATGCAACGGTTTTGTCAACAGTGTAGTAGGTTTCATCCGTTGTTGGAGTTTGATGAAGGGAAGAGAAGCTGTCGCCGGAGACTTGCGGGACATAATCGGCGCCGGAGAAAGACGCACCCGGATGAGGTGGCTTCTCCTCCGTTGAATCAGCATGTTGCGGCTGCGGCTAATTTGGAAATCTTTAACTTGTTGACTGCTATTGCTGATGGTTCGCAAGGAAAATTTGAAGAAAGAAGGTCACAAGTCCCAGATAAAGAGCATCTTGCACAGATTCTGAATAGGATCCCTTTACCTGCTGATCTTACAGCAAAGTTGCTGGATGTTGGCAATAACTTGAATGTGAAAAATGATAATGTGCAAATGCAAACCTCATCATTCTATCATCATCGTGATGTTCAACCTAACAAGGTCCCCTCGGCCCCGTTAACAATGGACTTACTTGGTGTTCTTTCCACCACTCCATCGACTCCGGTTCAAAATGCCATTTCGTTACACTCTCAAAATGGTGGCAACAAGTCTGCAACTAGTGCCGATCAGATTAGACAACAACAATTCACTTCAGTTGGTGGAGAAAGAAGTAGTGGCAGTTCTCAGTCTCTAAATGATGATTCAGATTGTCAGGAGGATGTTCGAGTGAATTTGCCACTGCAACTTTTTAGTTCCTCTCCAGAAGATGACTTCCGATCAAAATTGCCATCTTCGCGAAAGTACTTCTCGTCAGAAAGTAGTAACCCTGTGGACGAGAGGTCGCCGTCGTCATCTCCTCCTGTGGTGGAGATGAATTTTGGTTTACAAGGTGGGATTAGAGGTGTCAATCCTAATAGCAATTCAAATGGAGTAGGAGTCAATGCAAATAAGGAAACCAGCCAAAGTCATAGTTGTACTACTATCCCTCTTGATCTCTTTAAAGGGTCAAAATCAAATAACACTATCCAACAAGCTAGTTCAGTTCAAAGTGTTCCATTTAAAGCTGGTTATGCATCTTCAGGCTCTGATTATTCACCTCCCAGTTTGAATTCAGATACTCAGGATCGGACTGGGAGAATAATGTTTAAACTATTTGACAAGCATCCTAGCCATTTCCCAGGAACATTGCGCACACAGATTTACAACTGGCTTTCTACTCGACCATCAGACTTGGAGAGTTACATAAGGCCCGGCTGCGTCGTCCTATCAATTTATGCCACAATGTCTTCTGCTGCCTGGGCGCAACTAGAAGAAAACTTCCTCCAACGTGTTCATTCTTTAATTCACAACTCAGATTCTGATTTCTGGAGAAATGGTAGATTTCTTGTTTATTCTGGCAGTCAGTTAGCATCATACAAAGATGGAAAGATACGCATGTGCAAACCCTGGGGAACATGGAGGTCTCCAGAGTTGACATCAGTGTCCCCTTTGGCGATTGTTAGTGGACAAGAAACCTCTATGTCATTGAAGGGAAGAAACCTGTCTTCTTCTGGCACAAGGATTCATTGCACTGGTGCTGACTGTTACTCGTCATTAGAAGTTATAGGATCTGTAGATCCTGGTATGGTCTATGATGAGATAAAATTGAGTGGTTTTAAAGTTCAGAATACATCTCCTGGTGTTCTAGGCCGCTGTTTTGTTGAGGTTGAAAATGGTTTCAAGGGCAACTGTTTTCCAGTGATAATAGCCGACGCATCCATTTGCAAGGAATTGAGACCACTTGAGTCTGAATTTGATGAGGATGAAAAAATATGTGATGCCATTTCAGAGGAGCATGAATATCATTTTGGGAGGCCCAAGTCAAGGGATGAGGCTTTGCATTTTCTGAATGAGCTTGGCTGGCTGTTTCAAAGGGAAAGGTTGTCGAATGTGCACGAGGTTCCAGATTATTCGCTCGACAGGTTCAAATTTGTACTGACGTTTTCTGTGGAGAGAAACTGTTGCATGATAGTCAAAACCCTTTTGGATATGTTGGTTGATAAACACTTCGAAGGAGAAAGGTTGTCAACAGGGTCAATGGAGATGCTTAAAGCAATCCAACTCCTAAATAGAGCAGTGAAAAGAAAGTACATAAGCATGGTTGATATACTTGTCCATTATTCTATACCTAGCAAAAATGACACATCCAAGAAATATGTATTTCCACCAAATCTCGATGGACCTGGTGGTATTACTCCCTTGCATTTGGCAGCATCTACATTGGATTCTGAGGGTGTAATTGACTCTTTAACAAATGATCCACAAGAGATTGGGCTGAAGTGCTGGGAGACCCTTGTGGATGAAAATGGGCAGACTCCACATGCATATGCCACGATGAGAAATAACCAGTCTTACAATATGTTGGTTGCTCGGAAACTTTCTGATAGACAAAGAAGTGAAGTTGCAGTTAAAATCGACGAGATAGAGCACCAATCACTAGGAATTGAGCTTATGCAAAAGCAAATTAACCAAGTCAAACGGGTTGGTAACTCTTGTTCCAAGTGTGCAATTGCCGATGTTCACTTCAAGAGAAGATTTTCAGGTCCAAGGAACTGGCTTCACGGTCCCTTTATTCATTCAATGCTAGCTGTTGCCGCTGTTTGTGTTTGTGTTTGTGTGTTATTCCGCGGAACCCCTTTTGTAGGCTCAGTTTCTCCCTTCAGGTGGGAAAACTTGGAGTACGGCACAATTTAA 3078 0.4324 MEKVAPPLLPLPHPFYDSSNNKKRDLSYDVVHLPNDNWNPKEWNWDSVRFMAKSTVSQQLQQPEEALKLNLSGGGFTGGGVTNRANKRVRSGSPSGTATASASAASYPMCQVDNCKEDLSKAKDYHRRHKVCEAHSKASKALLGNQMQRFCQQCSRFHPLLEFDEGKRSCRRRLAGHNRRRRKTHPDEVASPPLNQHVAAAANLEIFNLLTAIADGSQGKFEERRSQVPDKEHLAQILNRIPLPADLTAKLLDVGNNLNVKNDNVQMQTSSFYHHRDVQPNKVPSAPLTMDLLGVLSTTPSTPVQNAISLHSQNGGNKSATSADQIRQQQFTSVGGERSSGSSQSLNDDSDCQEDVRVNLPLQLFSSSPEDDFRSKLPSSRKYFSSESSNPVDERSPSSSPPVVEMNFGLQGGIRGVNPNSNSNGVGVNANKETSQSHSCTTIPLDLFKGSKSNNTIQQASSVQSVPFKAGYASSGSDYSPPSLNSDTQDRTGRIMFKLFDKHPSHFPGTLRTQIYNWLSTRPSDLESYIRPGCVVLSIYATMSSAAWAQLEENFLQRVHSLIHNSDSDFWRNGRFLVYSGSQLASYKDGKIRMCKPWGTWRSPELTSVSPLAIVSGQETSMSLKGRNLSSSGTRIHCTGADCYSSLEVIGSVDPGMVYDEIKLSGFKVQNTSPGVLGRCFVEVENGFKGNCFPVIIADASICKELRPLESEFDEDEKICDAISEEHEYHFGRPKSRDEALHFLNELGWLFQRERLSNVHEVPDYSLDRFKFVLTFSVERNCCMIVKTLLDMLVDKHFEGERLSTGSMEMLKAIQLLNRAVKRKYISMVDILVHYSIPSKNDTSKKYVFPPNLDGPGGITPLHLAASTLDSEGVIDSLTNDPQEIGLKCWETLVDENGQTPHAYATMRNNQSYNMLVARKLSDRQRSEVAVKIDEIEHQSLGIELMQKQINQVKRVGNSCSKCAIADVHFKRRFSGPRNWLHGPFIHSMLAVAAVCVCVCVLFRGTPFVGSVSPFRWENLEYGTI 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03819 1025 MobiDBLite consensus disorder prediction 305 352 - -
Vifa3g03819 1025 MobiDBLite consensus disorder prediction 367 405 - -
Vifa3g03819 1025 SUPERFAMILY SBT domain 108 189 IPR036893 GO:0003677|GO:0005634
Vifa3g03819 1025 Gene3D - 100 171 IPR036893 GO:0003677|GO:0005634
Vifa3g03819 1025 MobiDBLite consensus disorder prediction 305 349 - -
Vifa3g03819 1025 MobiDBLite consensus disorder prediction 414 434 - -
Vifa3g03819 1025 ProSiteProfiles Zinc finger SBP-type profile. 107 184 IPR004333 GO:0003677
Vifa3g03819 1025 MobiDBLite consensus disorder prediction 367 434 - -
Vifa3g03819 1025 Pfam SBP domain 110 183 IPR004333 GO:0003677
Vifa3g03819 1025 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 43 801 IPR044817 GO:0003677
Vifa3g03819 1025 MobiDBLite consensus disorder prediction 78 103 - -
Vifa3g03819 1025 FunFam Squamosa promoter-binding-like protein 14 101 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03819 Vifa-Chr3 1121114021 1121118788 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03819 3 1025 SBP-box Gene Family AT1G20980 50.186 0.0 904
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vifa3g03819 SBP 2.7e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03819 - - gmx:100819004 1396.33