Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03815 ATGGCTAGTTGTGGAAGAGAAGGTGTAGTGAGACAATATGTAAGATCAAAAGTTCCTCGTTTAAGATGGACACCAGAACTTCATCGTTGTTTTGTTTATGCCATTGAAACTCTTGGTGGTCATCAAAAGGCTACTCCTAAGCTTGTCCTTCAGTTGATGGATGTTAAAGGGCTTACAATCTCACATGTCAAAAGCCATTTGCAGATGTATAGGAGCATGAGAAGTGACTCATGTAACAACCAAGATAGGACTATATCCGTACATAAAAGACAATCTTTTCAAGAGAATGATGATGGTTTTCGAAATGAATCTATTGGAAAGGAATCTGATTCTCTCTTTAGCTACACAAATTTCTCCCAAAAAAGAGCTAGAATCGAGAAGAAAAGTTCATTCTCAGGAATCTTAGAATGCAGAGAAAGAATATATGAAGAAGTTCCAAAAAATCCATATACAAGATTCTATGATTATGTTCAGGACATGGTTCAGGAGCAGCAGAAAGGAATAAAGAACATTTGTGTTGATGGTTCAATATGGAAGGTCACTCCTGAAGTACCACAATATTGCACAATGCTACCGAAACAAGAAACTCATTTGTTCAAGGTTACAAAATTAAATGAAAAAAAGAATGTGAATGAAAAGTGTGTACGTGCAGAAGAAGAAGGTTGTGAATTGTCATTATCAATTTCATTACCTCAAGAAAATAATGATGTGAGAGACTCTGGATTTAGCAACTTTATGGGTTGTTCTATTGTCCAAAACAGAATTAATTTGGATCTATCTTTGGCCATTTGA 792 0.3548 MASCGREGVVRQYVRSKVPRLRWTPELHRCFVYAIETLGGHQKATPKLVLQLMDVKGLTISHVKSHLQMYRSMRSDSCNNQDRTISVHKRQSFQENDDGFRNESIGKESDSLFSYTNFSQKRARIEKKSSFSGILECRERIYEEVPKNPYTRFYDYVQDMVQEQQKGIKNICVDGSIWKVTPEVPQYCTMLPKQETHLFKVTKLNEKKNVNEKCVRAEEEGCELSLSISLPQENNDVRDSGFSNFMGCSIVQNRINLDLSLAI 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03815 263 FunFam Myb family transcription factor 17 75 - -
Vifa3g03815 263 Gene3D - 18 75 - -
Vifa3g03815 263 Coils Coil 200 220 - -
Vifa3g03815 263 Pfam Myb-like DNA-binding domain 21 71 IPR001005 -
Vifa3g03815 263 NCBIfam myb-like DNA-binding domain, SHAQKYF class 19 72 IPR006447 GO:0003677
Vifa3g03815 263 SUPERFAMILY Homeodomain-like 17 73 IPR009057 -
Vifa3g03815 263 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Vifa3g03815 263 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 8 106 IPR046955 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03815 Vifa-Chr3 1119762997 1119764636 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03815 1 74 G2-like Transcription Factor Family AT1G14600 72.152 1.30e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa3g03815 Myb_DNA-binding 1.2e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03815 - - gmx:100810994 304.679
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03815 3 1119762997 1119764636 Vifa3g03815 3 1119762997 1119764636 ECH