Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa3g03810 | ATGGATGCATCATTTTCAGCAGCATCTTTCTTTACAAGAACTGAAGAGGATCAGAGTGAGATGAATCACCAAAATTCATCATCATCAACAACTCCATCTGCACCACCACCTCAGAAGAAAAGAAGAAACCAACCCGGAACACCATATCCAGATTCTGAAGTGATAACACTTTCTCCAAGGAGTCTAATGGCAACAAACAGATTTGTATGTGAAGTGTGTCAAAAAGGGTTTCAAAGAGAGCAAAATTTGCAACTTCATAGAAGAGGACACAATCTACCTTGGAAGCTAAAGCAAAAGAGTAACAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCTGAGCCTTCTTGTGTTCACCATGACCCTTCAAGAGCTCTTGGTGACCTAACTGGAAAGAAGCACTTTTCTAGAAAGCACGGTGAGAAAAAGTGGAAATGTGAAAAGTGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCTAAAACTTGTGGGACTAGGGAGTATAGATGTGACTGTGGCACTCTCTTCTCTAGAAGAGACAGTTTCATCACACATAGAGCCTTTTGTGATGCACTTGCTCAAGAAAGTTCAAGACAACCACAACAATTACCAACCTTAATCACCAACACTTCCATTAACAACTCTCAACTATTTGGAAACATTAGCAACAACAATATCTCATTAGCCTTGTCTCAAATTCCTCCACAACAAATCTCATCAATTCATGACCAAAACGACACCAACCAATCTACTGAAATCCTGCGTTTTGGCAACCACAACATTCTATCCCCACCTCCACAACATCCTCTTCACACCCCTCCATTCAATTTCATCACTCAACAACAACCAAACCATAATTTTCATCATGAACATCATTCTCAAACATTCCAAGGACTAATATCATTGTCTGAACTCAACAACAACAACATCATCAACAATGATAACAATTTTTTTTCTGAAAATTTCAACCATGAAGGATTCTTTTCTGAAAATCCACTAACGTGTGGTCATAATAATAACCAAACAAATCCTGTCTCACCTCACATGTCAGCTACTGCACTTCTTCAAAAAGCTTCTCAAATGGGTGCAACTTCAAGCACAAACAACAATAACACTGCTTCTTCATTACTAAGAAGCTATGGTGGTTCATCTTCTTCTGTAGCAACAAAGGTTAATGGTAATGGTTCTGATGGACTCACTAGAGATTTTCTTGGAGTTGGTCAAATAGTAATGAGAAACATGAATGGGGGAGGAGTTTCACAAAGAGAACAACGAAACTTCAACGTGGAAGCTGAAAAAAACGCTGCAGCTTTTGGAGGGAACTTTGAGTGA | 1338 | 0.3886 | MDASFSAASFFTRTEEDQSEMNHQNSSSSTTPSAPPPQKKRRNQPGTPYPDSEVITLSPRSLMATNRFVCEVCQKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYLCPEPSCVHHDPSRALGDLTGKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESSRQPQQLPTLITNTSINNSQLFGNISNNNISLALSQIPPQQISSIHDQNDTNQSTEILRFGNHNILSPPPQHPLHTPPFNFITQQQPNHNFHHEHHSQTFQGLISLSELNNNNIINNDNNFFSENFNHEGFFSENPLTCGHNNNQTNPVSPHMSATALLQKASQMGATSSTNNNNTASSLLRSYGGSSSSVATKVNGNGSDGLTRDFLGVGQIVMRNMNGGGVSQREQRNFNVEAEKNAAAFGGNFE | 445 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa3g03810 | 445 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
Vifa3g03810 | 445 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 122 | 200 | - | - | |
Vifa3g03810 | 445 | MobiDBLite | consensus disorder prediction | 361 | 381 | - | - | |
Vifa3g03810 | 445 | SUPERFAMILY | beta-beta-alpha zinc fingers | 67 | 163 | IPR036236 | - | |
Vifa3g03810 | 445 | SMART | c2h2final6 | 68 | 90 | IPR013087 | - | |
Vifa3g03810 | 445 | SMART | c2h2final6 | 143 | 163 | IPR013087 | - | |
Vifa3g03810 | 445 | Gene3D | Classic Zinc Finger | 51 | 116 | - | - | |
Vifa3g03810 | 445 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 17 | 422 | IPR031140 | - | |
Vifa3g03810 | 445 | Pfam | Zinc-finger double-stranded RNA-binding | 68 | 90 | IPR022755 | - | |
Vifa3g03810 | 445 | MobiDBLite | consensus disorder prediction | 1 | 53 | - | - | |
Vifa3g03810 | 445 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 70 | 90 | IPR013087 | - | |
Vifa3g03810 | 445 | Gene3D | Classic Zinc Finger | 126 | 201 | - | - | |
Vifa3g03810 | 445 | FunFam | protein indeterminate-domain 12-like | 47 | 115 | - | - | |
Vifa3g03810 | 445 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 68 | 90 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa3g03810 | Vifa-Chr3 | 1118312607 | 1118316193 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa3g03810 | 38 | 208 | IDZ Gene Family | AT2G02070 | 86.047 | 9.53e-109 | 332 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Vifa3g03810 | zf-C2H2 | 0.0041 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa3g03810 | K25870 | - | gmx:100807789 | 449.899 |