Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03810 ATGGATGCATCATTTTCAGCAGCATCTTTCTTTACAAGAACTGAAGAGGATCAGAGTGAGATGAATCACCAAAATTCATCATCATCAACAACTCCATCTGCACCACCACCTCAGAAGAAAAGAAGAAACCAACCCGGAACACCATATCCAGATTCTGAAGTGATAACACTTTCTCCAAGGAGTCTAATGGCAACAAACAGATTTGTATGTGAAGTGTGTCAAAAAGGGTTTCAAAGAGAGCAAAATTTGCAACTTCATAGAAGAGGACACAATCTACCTTGGAAGCTAAAGCAAAAGAGTAACAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCTGAGCCTTCTTGTGTTCACCATGACCCTTCAAGAGCTCTTGGTGACCTAACTGGAAAGAAGCACTTTTCTAGAAAGCACGGTGAGAAAAAGTGGAAATGTGAAAAGTGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCTAAAACTTGTGGGACTAGGGAGTATAGATGTGACTGTGGCACTCTCTTCTCTAGAAGAGACAGTTTCATCACACATAGAGCCTTTTGTGATGCACTTGCTCAAGAAAGTTCAAGACAACCACAACAATTACCAACCTTAATCACCAACACTTCCATTAACAACTCTCAACTATTTGGAAACATTAGCAACAACAATATCTCATTAGCCTTGTCTCAAATTCCTCCACAACAAATCTCATCAATTCATGACCAAAACGACACCAACCAATCTACTGAAATCCTGCGTTTTGGCAACCACAACATTCTATCCCCACCTCCACAACATCCTCTTCACACCCCTCCATTCAATTTCATCACTCAACAACAACCAAACCATAATTTTCATCATGAACATCATTCTCAAACATTCCAAGGACTAATATCATTGTCTGAACTCAACAACAACAACATCATCAACAATGATAACAATTTTTTTTCTGAAAATTTCAACCATGAAGGATTCTTTTCTGAAAATCCACTAACGTGTGGTCATAATAATAACCAAACAAATCCTGTCTCACCTCACATGTCAGCTACTGCACTTCTTCAAAAAGCTTCTCAAATGGGTGCAACTTCAAGCACAAACAACAATAACACTGCTTCTTCATTACTAAGAAGCTATGGTGGTTCATCTTCTTCTGTAGCAACAAAGGTTAATGGTAATGGTTCTGATGGACTCACTAGAGATTTTCTTGGAGTTGGTCAAATAGTAATGAGAAACATGAATGGGGGAGGAGTTTCACAAAGAGAACAACGAAACTTCAACGTGGAAGCTGAAAAAAACGCTGCAGCTTTTGGAGGGAACTTTGAGTGA 1338 0.3886 MDASFSAASFFTRTEEDQSEMNHQNSSSSTTPSAPPPQKKRRNQPGTPYPDSEVITLSPRSLMATNRFVCEVCQKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYLCPEPSCVHHDPSRALGDLTGKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQESSRQPQQLPTLITNTSINNSQLFGNISNNNISLALSQIPPQQISSIHDQNDTNQSTEILRFGNHNILSPPPQHPLHTPPFNFITQQQPNHNFHHEHHSQTFQGLISLSELNNNNIINNDNNFFSENFNHEGFFSENPLTCGHNNNQTNPVSPHMSATALLQKASQMGATSSTNNNNTASSLLRSYGGSSSSVATKVNGNGSDGLTRDFLGVGQIVMRNMNGGGVSQREQRNFNVEAEKNAAAFGGNFE 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03810 445 MobiDBLite consensus disorder prediction 1 37 - -
Vifa3g03810 445 FunFam protein indeterminate-domain 5, chloroplastic-like 122 200 - -
Vifa3g03810 445 MobiDBLite consensus disorder prediction 361 381 - -
Vifa3g03810 445 SUPERFAMILY beta-beta-alpha zinc fingers 67 163 IPR036236 -
Vifa3g03810 445 SMART c2h2final6 68 90 IPR013087 -
Vifa3g03810 445 SMART c2h2final6 143 163 IPR013087 -
Vifa3g03810 445 Gene3D Classic Zinc Finger 51 116 - -
Vifa3g03810 445 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 17 422 IPR031140 -
Vifa3g03810 445 Pfam Zinc-finger double-stranded RNA-binding 68 90 IPR022755 -
Vifa3g03810 445 MobiDBLite consensus disorder prediction 1 53 - -
Vifa3g03810 445 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Vifa3g03810 445 Gene3D Classic Zinc Finger 126 201 - -
Vifa3g03810 445 FunFam protein indeterminate-domain 12-like 47 115 - -
Vifa3g03810 445 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 90 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03810 Vifa-Chr3 1118312607 1118316193 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03810 38 208 IDZ Gene Family AT2G02070 86.047 9.53e-109 332
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa3g03810 zf-C2H2 0.0041 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03810 K25870 - gmx:100807789 449.899