Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03809 ATGGCTGCTTCTTCATCTTCTACACCTTTCTTGGAAATCAGACAAGAAAATCAAAGTCAGATTACACAACAACATCAATCTTCTACCGATGTTTCATCAACAGCTGTTCAACCGTTAGTGCCGAAAAAAAGAAGAAATCAACCAGGAACACCATATCCAGATGCAGAAGTGATAGCACTATCTCCAAAGACACTAATGGCAACAAACAGATTTGTATGTGAAGTGTGTCAAAAAGGGTTTCAAAGAGAGCAAAATTTGCAACTTCATAGAAGAGGACACAATCTACCTTGGAAGCTAAAGCAAAAGAGTAACAAAGAGCCAAAGAGAAAGGTTTATCTGTGTCCTGAACCTTCTTGTGTTCACCATGACCCTTCAAGAGCTCTTGGTGACCTAACTGGGATCAAGAAGCACTTTTCTAGAAAGCACGGTGAGAAAAAGTGGAAATGTGAAAAGTGTTCTAAGAAATATGCTGTTCAATCTGATTGGAAAGCTCATTCTAAAACTTGTGGAACTAGGGAGTATAGATGTGACTGTGGCACTCTCTTCTCTAGGCGTGATAGTTTCATTACTCATAGGGCATTTTGTGATGCACTAGCACATGAAAATGCAAGACACCCTTCCAACATGAACCCTTTAGCAACACATCTATTTTCGACAAACCACATGGGTTTAGCCCTAAACCAAAACCAACAAACATCCTCAAACAACATGTTAACCCTAGGAAACATTCCTTGTACACCAAAATATGAACATCATTTGATCTCACCTTTGCATCAATCATCATCATCATTTGTTCAACAACAACAACAATCACCACAAAACCAATCAATGTCTTCATCACCTTTCTTCATCAATGATCCAAATCAAACTTTCCAACAAGACCTTTCTTCACCATTCTCAAACAAACAACTTCATCTTCATCATGGTCTCTTGCAACTTCCTGATCTTCAAGGAAATACCAATACCAACACAACTTCTTCGTCGGTGTCGCCTTTTAACCTTAGCTTCTTTCCAAATACCAATGGTAGCACAATGCAAGATCAGTTCAATAACATGAGTGAACCACATCACCACCATCATCATCATCAGCAGCAAGAAGGTTTTTCTTCACTCTTTGGTAATTCATCAATGCAACAAGAGACCATGTTGTCCTCACCACACATGTCAGCAACTGCATTGCTTCAAAAAGCTGCTCAAATAGGTTCAACAACAACAACTACTATCAATAACAACGGTGTGGAATCTAATAACGAAGGAATAAGATCAAGCATGGAAAATGAACACAATCAACATCTACATGGATTGCTAAACTCTCTTGGGAATGGAAACACTTCAATATATGGAAATATGAATCATGACAACAACATTAACCTTGGTCAGTTTCAGAATGTGGACGAGAACAAAAAGTTGTCACGACAAAATCTATCTGGTAATTTGTGCTTTGGAGGATCAGATAAATTGACTTTGGATTTTCTTGGTGTTGGAGGAATGGTGAGAAACATGAGTGGTGGATTTTCACAAAGAGAACAGCAACTACACTCCATGAGTAATATAAACAACATGGATCCGAAGTTGGAATCAACACAAGCAAACCAACGTTTTTGA 1605 0.3844 MAASSSSTPFLEIRQENQSQITQQHQSSTDVSSTAVQPLVPKKRRNQPGTPYPDAEVIALSPKTLMATNRFVCEVCQKGFQREQNLQLHRRGHNLPWKLKQKSNKEPKRKVYLCPEPSCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAHENARHPSNMNPLATHLFSTNHMGLALNQNQQTSSNNMLTLGNIPCTPKYEHHLISPLHQSSSSFVQQQQQSPQNQSMSSSPFFINDPNQTFQQDLSSPFSNKQLHLHHGLLQLPDLQGNTNTNTTSSSVSPFNLSFFPNTNGSTMQDQFNNMSEPHHHHHHHQQQEGFSSLFGNSSMQQETMLSSPHMSATALLQKAAQIGSTTTTTINNNGVESNNEGIRSSMENEHNQHLHGLLNSLGNGNTSIYGNMNHDNNINLGQFQNVDENKKLSRQNLSGNLCFGGSDKLTLDFLGVGGMVRNMSGGFSQREQQLHSMSNINNMDPKLESTQANQRF 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03809 534 SMART c2h2final6 147 167 IPR013087 -
Vifa3g03809 534 SMART c2h2final6 71 93 IPR013087 -
Vifa3g03809 534 SMART c2h2final6 112 142 IPR013087 -
Vifa3g03809 534 Gene3D Classic Zinc Finger 125 204 - -
Vifa3g03809 534 MobiDBLite consensus disorder prediction 315 351 - -
Vifa3g03809 534 MobiDBLite consensus disorder prediction 1 54 - -
Vifa3g03809 534 MobiDBLite consensus disorder prediction 259 296 - -
Vifa3g03809 534 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Vifa3g03809 534 Pfam Zinc finger, C2H2 type 71 93 IPR013087 -
Vifa3g03809 534 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Vifa3g03809 534 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Vifa3g03809 534 FunFam protein indeterminate-domain 12-like 50 118 - -
Vifa3g03809 534 FunFam protein indeterminate-domain 5, chloroplastic-like 125 204 - -
Vifa3g03809 534 MobiDBLite consensus disorder prediction 315 367 - -
Vifa3g03809 534 Gene3D Classic Zinc Finger 54 119 - -
Vifa3g03809 534 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 515 IPR031140 -
Vifa3g03809 534 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03809 Vifa-Chr3 1117734135 1117737851 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03809 42 217 IDZ Gene Family AT2G02070 86.932 1.20e-113 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa3g03809 zf-C2H2 0.0051 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03809 K25870 - gmx:100806198 624.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03809 3 1117734135 1117737851 Vifa3g03809 3 1117734135 1117737851 ECH