Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03808 ATGAAACCCGAACTGTACGAAATCTCCGACGACGAATGGGAGAACCACTCCTTCAAACCCTCTCGCGTCCTCAAACGACCTCGCTCTCCGCCGCCGCCTCTCGAATCCTTCGCTTATAAACCTCCTTCCCACACCGTTTCCACCGACGACGATGCCGATTGCGTTGAAATCGAAATCAATCCAAATACCGCTAATACCTCTGAATGCCTCGATGATTTAGAGGACGCTGACGTGGATGACAGTAAAGCAGCTCCCGCGACGGCGACGACTCGGCGGAGGTTTATAATTGATGATGACGAGGAGGAATTCGCCGGAGATGATGTTGATTTGTTTGAGATTGATTCGACGGAGGAGGATGAGATTGAAGAAGAGATTGAAGATGATTTGGTTGGTAGGGCTTTGCAGAAGTGTGCTAGGATTTCGGTTGAGTTGAAAGGTGAGCTGTTTGGTTCTTCTGGTGTTGTTTGTGATAGGTATTCGGAGGTGGAGTCTTCTTCAGTCAGAATCGTTACTCAGGATGATATTGATGTTGCGTGTGCGTCTGAGGATTCCGATTTTCAACCTCTGTTAAAGCCGTATCAACTGGTTGGTGTTAATTTTTTGATGCTGCTGTATCGGAAGGGTATTGCAGGAGCCATATTGGCAGATGAAATGGGGCTTGGAAAAACGGTTCAGGCAATCACATATTTGACTTTGTTGAATCACTTGCACAATGATTCTGGTCCACATCTTATAGTTTGTCCTGCTTCTGTTTTGGAAAACTGGGAAAGGGAACTAAAGAGGTGGTGTCCATCCATTTCTGTTCTTCAATATCACGGGGCTGCACGCACAGCATACTGCAAGGAGTTAAACTCCTTATCCAAAGCAGGATTGCCTCCCCCATTTAATGTTCTTCTTGTGTGTTACTCACTTTTCGAACGGCACAGTCCACAGCAGAAGGATGATCGTAAAATCCTGAAGCGTTGGAAATGGAGCTGTGTACTGATGGATGAGGCACATGCTTTAAAGGACAAAAATAGCTTTAGGTGGAAAAATCTGATGTCTGTTGCTCGAAATGCAAACCAACGCTTGATGCTGACAGGGACACCTCTTCAAAATGACTTACATGAGTTATGGTCTATGTTGGAGTTTATGATGCCTGATATTTTTGCTTCTGAAGACGTTGATTTAAAAAAGTTACTAAGTGCTGAAGATACTGATTTAATTAGTCGTATGAAGTCTATCTTAGGGCCATTTATTTTGCGGCGTCTGAAATCTGATGTAATGCAGCAACTTGTTCAAAAAACACAAAAGGTTGAATATGTTATGATGGTAAAGCAACAGGAACATGCATACAGGGAAGCCATTGAGGAGTATCGTGCTGTTTCACAAGCTCGCTTAACAAAATGTTCTGATCTGAACCCAAAAAATGTTCTCGAACTTCTTCCTCGACGACAAATAAATAATTATTTTGTTCAGTTTCGCAAGATTGCCAACCATCCCTTGTTGATAAGGCGAGTTTATAATGATGAGGATGTTATTCGCTTTGCTAGGAAGCTACATCCATTGGGTGCTTTTGGCTTTGAATGTACTATGGACAGAGTTATAGAGGAGCTTAAAAGTTACAATGACTTCTCCATTCACCGGCTTTTACTTCATTATCGTATCAATGATAAAAAGGGGATTCTTTCAGATAAGTACGTTATGCTTTCTGCAAAATGCCGGGCTCTAGCAGAACTTCTTCCGTCGCTAAAGAAGAGTGGTCATCGTGTCTTGATCTTTAGTCAATGGACATCAATGCTTGATGTATTGGAGTGGGCTTTGGATGTTATTGGGTTGACCTACAAACGACTTGATGGAAGCACACAGGTAGCAGAGAGGCAAACAATAGTTGACACATTCAATACTGATACTTCGATATTTGCATGCTTGCTTTCCACAAGAGCTGGTGGACAAGGCTTAAACTTAACTGGAGCTGATACAGTTGTGATTCATGACATGGATTTTAATCCACAGATTGATAGACAGGCAGAAGATCGTTGTCATCGAATTGGTCAGACAAAGCCTGTAACCATATATAGACTGGTGACAAAGGGAACAGTTGATGAGAATGTGTATGAGATTGCAAAGAGAAAGCTAGGATTAGATGCCGCTGTTCTAGAGTCCATGGAAGATATCAAAGAAGGGGACATGCCTGAGAAGACAATGGGAGAGATATTGTCTGCAATTTTGTTAAAATATTGA 2223 0.4247 MKPELYEISDDEWENHSFKPSRVLKRPRSPPPPLESFAYKPPSHTVSTDDDADCVEIEINPNTANTSECLDDLEDADVDDSKAAPATATTRRRFIIDDDEEEFAGDDVDLFEIDSTEEDEIEEEIEDDLVGRALQKCARISVELKGELFGSSGVVCDRYSEVESSSVRIVTQDDIDVACASEDSDFQPLLKPYQLVGVNFLMLLYRKGIAGAILADEMGLGKTVQAITYLTLLNHLHNDSGPHLIVCPASVLENWERELKRWCPSISVLQYHGAARTAYCKELNSLSKAGLPPPFNVLLVCYSLFERHSPQQKDDRKILKRWKWSCVLMDEAHALKDKNSFRWKNLMSVARNANQRLMLTGTPLQNDLHELWSMLEFMMPDIFASEDVDLKKLLSAEDTDLISRMKSILGPFILRRLKSDVMQQLVQKTQKVEYVMMVKQQEHAYREAIEEYRAVSQARLTKCSDLNPKNVLELLPRRQINNYFVQFRKIANHPLLIRRVYNDEDVIRFARKLHPLGAFGFECTMDRVIEELKSYNDFSIHRLLLHYRINDKKGILSDKYVMLSAKCRALAELLPSLKKSGHRVLIFSQWTSMLDVLEWALDVIGLTYKRLDGSTQVAERQTIVDTFNTDTSIFACLLSTRAGGQGLNLTGADTVVIHDMDFNPQIDRQAEDRCHRIGQTKPVTIYRLVTKGTVDENVYEIAKRKLGLDAAVLESMEDIKEGDMPEKTMGEILSAILLKY 740
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03808 740 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 416 IPR027417 -
Vifa3g03808 740 Gene3D - 545 734 IPR027417 -
Vifa3g03808 740 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 322 720 IPR027417 -
Vifa3g03808 740 CDD SF2_C_SNF 556 689 - -
Vifa3g03808 740 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 203 381 IPR014001 -
Vifa3g03808 740 MobiDBLite consensus disorder prediction 19 51 - -
Vifa3g03808 740 CDD DEXHc_Snf 190 383 - -
Vifa3g03808 740 PANTHER SNF2/RAD54 HELICASE FAMILY 126 715 - -
Vifa3g03808 740 Pfam Helicase conserved C-terminal domain 566 678 IPR001650 -
Vifa3g03808 740 Pfam SNF2-related domain 209 496 IPR000330 GO:0005524|GO:0140658
Vifa3g03808 740 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 569 720 IPR001650 -
Vifa3g03808 740 SMART ultradead3 186 391 IPR014001 -
Vifa3g03808 740 FunFam Protein CHROMATIN REMODELING 19 isoform A 161 439 - -
Vifa3g03808 740 Gene3D - 426 501 IPR027417 -
Vifa3g03808 740 Gene3D - 190 425 IPR038718 -
Vifa3g03808 740 SMART helicmild6 595 678 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03808 Vifa-Chr3 1116969735 1116988392 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03808 211 717 RAD5 or RAD16-like Gene Family AT5G22750 26.677 9.59e-46 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vifa3g03808 SNF2_N 5.9e-56 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03808 K14439 - gmx:100806323 1221.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03808 3 1116969735 1116988392 Vifa3g03808 3 1116969735 1116988392 ECH