Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03806 ATGGCTTCATCACCATTATTATTCACAGTGAGGAGGTTCCAACCAGAGTTGGTGCTTCCAGCTGCTTCAACTCCTCGAGAAGTTAAACTGCTATCTGACATAGATGATCAACAAGGTTTGCGTTTCAATGTTCCTTTCATATTTATCTATCGCCATGAACCAAGAATGGCAGAAAAAGACCCGGTTGAAGTTCTTAGAAATGCACTCTCACAAACACTTGTTTATTACTATCCATTTGCGGGAAGGATTATAGAAGGTGTTGGACGAAAGTTGATGGTTGATTGTACTGGTGAAGGTGTCATGTTCATTGAAGCTGAAGCTGATGTAACACTTGACCAATTTGGTGACACTCTCCAACCACCATTCCCTTGCTTCCAAGAACTTCTCTATGATGTTACTGGCTCCGAACTAATTATTGATCGTCCCTTTCGACTCATACAAGTGACACGTCTCAAGTGCGGTGGTTTCATAATAGTAATTAATTGGAACCATATCATGATCGATGCAATTGGTTTAAAACAGTTCATGAATGCTTGGGCAGAAATGGCTCGAGGAGAACATCAACCTTCGATTCAACCTGTCTGGCATAGAGAGATTCTCATGGCAAGAAAGCCACCACGCATTACATGCAATCATCCTGAATACGAACAAACACTTCCATCAAATATCATCAAAGAAGAAGATACTGCTACCACCATAGTACATCAATCTTTCTGCTTTAGACCTTCAGACATAGCTGCAATTCGTCTCTTGGTTCCATTTCAATGCACCACATTTGATCTTATTGCAGCATGTTTTTGGTACTGTCGCACAAAAGCATTGCAGTTAGAGCCAGAGAAGGAAGTACGAATAATGTACCCCGTCAATGCACGTTCAAGGTTTAAGAATAATCATTCATCATTTGTTGGATATTATGGTAATTGTATTGCTTTCCCGGCGGCTGTAACCACAGCAGGGAAGCTTTGCGGGAACTCACTAGGTTATGCAGTAGAATTGATAAGAAAGTTAAAAGGACAAGTTACAGAAGAATACATCCAATCAGTGGCAGATCTTATGGTTATTAAGGGACGATGTTCATATACAACCTTAAGGTCTTGTCTTATTACAGATTTGAGTCGTTTTAAATTTAACCAAGTGAATTTTGGATGGGGTGAAGGAGTGTATGGTGGAAATGCAAGAGGTGGGGCTGGTTTGTTTCATGGAGCAAGTATTATTGTTTCACATAAAAATTCAAAAGGAGAAGAATGTTTGATATTAACAATTTGCTTGCCTTTAGAAGAGATGAAAAGATTTAAAAAAGAGTTAGATGAGATGCTTGATAGCAATAATCAACCTACAAGGAGTGTTTCTGGTTTTGTGAAGTCTACCTTGTGTCTAGCTTTTGATGATTGGTGGTTGATGGCATAA 1407 0.393 MASSPLLFTVRRFQPELVLPAASTPREVKLLSDIDDQQGLRFNVPFIFIYRHEPRMAEKDPVEVLRNALSQTLVYYYPFAGRIIEGVGRKLMVDCTGEGVMFIEAEADVTLDQFGDTLQPPFPCFQELLYDVTGSELIIDRPFRLIQVTRLKCGGFIIVINWNHIMIDAIGLKQFMNAWAEMARGEHQPSIQPVWHREILMARKPPRITCNHPEYEQTLPSNIIKEEDTATTIVHQSFCFRPSDIAAIRLLVPFQCTTFDLIAACFWYCRTKALQLEPEKEVRIMYPVNARSRFKNNHSSFVGYYGNCIAFPAAVTTAGKLCGNSLGYAVELIRKLKGQVTEEYIQSVADLMVIKGRCSYTTLRSCLITDLSRFKFNQVNFGWGEGVYGGNARGGAGLFHGASIIVSHKNSKGEECLILTICLPLEEMKRFKKELDEMLDSNNQPTRSVSGFVKSTLCLAFDDWWLMA 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03806 468 PANTHER ACYL TRANSFERASE 4 8 439 - -
Vifa3g03806 468 Gene3D - 216 435 IPR023213 -
Vifa3g03806 468 Gene3D - 9 215 IPR023213 -
Vifa3g03806 468 Pfam Transferase family 13 437 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03806 Vifa-Chr3 1116293894 1116295416 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03806 17 438 Monolignol Biosynthesis Gene Families AT5G48930 27.790 5.13e-43 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03806 K19861 - gmx:100792864 545.428