Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03805 ATGGGGAGGATCAAGCCTCAAGCTTTGTTGCAACAAAGCAAAAGAAAGAAAGGACCTTATCACATGAGTCCAATGCTTATCATGTTTTACTCTTTGATTCTTTTCATATTTGTGCTTTTCCTCTTTGCTACATTCAGATACTGGTCCATTCGACTCGGGAACCACTCATCAGTATTTAAGGATGCATATTCTTATGTGGAATCCAAGAAATCTGATCTACCTGAATATGCTGTTTTTAGAACCTCTAAAGGTTCTATAATAATAGAACTTTACAAGGAAAGTGCTCCTGAAGTTGTTGATGAATTCATTGATTTATGTCAAAAGGGACACTTCAAGGGGATGCTTTTTCACCAAGTAATTAAGCACTATGTTATTCAAGCAAGTCATAACAAAGGGACAGGGTCTATCGAAGATTGGAACCTCAGAGGGAAGAAATATACAAGTATAAAATACGAAGCATTCATGCTTGGAACTTCCAAGGACAAATACATCAACAAAGGATTTGATCTTTTCATCACGACCGCGCCAATACCTGATCTAAACGAGAAACTTATTATTTTCGGTCGGGTTGTAAAGGGAGAGGACGTAGTTCAGGAAATTGAAGAAGTGGACACTGATGAACATTATCAACCAAAACTTTCTACTGGAATAATTGATGTAGATCTTAGACAAATGATGTGA 681 0.37 MGRIKPQALLQQSKRKKGPYHMSPMLIMFYSLILFIFVLFLFATFRYWSIRLGNHSSVFKDAYSYVESKKSDLPEYAVFRTSKGSIIIELYKESAPEVVDEFIDLCQKGHFKGMLFHQVIKHYVIQASHNKGTGSIEDWNLRGKKYTSIKYEAFMLGTSKDKYINKGFDLFITTAPIPDLNEKLIIFGRVVKGEDVVQEIEEVDTDEHYQPKLSTGIIDVDLRQMM 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03805 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 90 105 IPR002130 GO:0000413|GO:0003755
Vifa3g03805 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 169 181 IPR002130 GO:0000413|GO:0003755
Vifa3g03805 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 182 197 IPR002130 GO:0000413|GO:0003755
Vifa3g03805 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 116 128 IPR002130 GO:0000413|GO:0003755
Vifa3g03805 226 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 73 222 IPR002130 GO:0000413|GO:0003755
Vifa3g03805 226 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP21-4 1 225 - -
Vifa3g03805 226 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 77 220 IPR002130 GO:0000413|GO:0003755
Vifa3g03805 226 SUPERFAMILY Cyclophilin-like 73 222 IPR029000 -
Vifa3g03805 226 Gene3D - 60 225 IPR029000 -
Vifa3g03805 226 CDD cyclophilin 78 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03805 Vifa-Chr3 1115933733 1115935059 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03805 76 222 U-box Gene Family AT5G67530 27.451 1.80e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03805 - - gmx:100796043 340.887