Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03802 ATGAATTCTCAAAACCCAAACCCAATCTTTCCTTCACCTCCACCGGGTTTTCATAACCCAGCTCCATTGCTAACTCCGAAGCAAGAGCCTCGTGACGAAACACCTCAACAAGAAGAACATCAACAACCGCAACAACCGAATCTCAATGATCTTCCGAACCTCAATCTTAACCTAAATCTTAACCTCGATGATATTTATGAACAAGAAACCCTACCCGGGTTTTCCAACTTTAACTTTCCCTCAGAGGCTTACCAAACCAGGTTCACCACAGGACTACAACAGCTCGAAAACGACGACCTTGATGATCCTAATTCACTCGCCATCGTTCCGGTTCCCGAGGCGCGTCAGAATTACGATTACAATGCTCCGGCGGGGGCGGGGGAAGTTGCGGCGCAGAGGCAACGGCGTTATAAGGAGCTTGTCCGCGTGGCGGATCTTGGTTTAGCGGAGCAGCGTCAGTTCAGGGACCTTGTGAGAAGGACGAGGATGGTTTATGATTCTCTTCGCGTTTTGGCTTTGATTGAAGAAGAGAAGAGAGGTGATGTTCGGAGAGTGAGAAGCGATCTGAGAGCTTCTGCTTTGATGAGGAACAAGGGTTTGTGGCTGAATCGTGATAAGAGAATCGTTGGTCCGATTCCGGGTATTTGTATTGGTGATGTGTTTCTTTATAGAATGGAGTTGGTTGTGATTGGTTTACATGGTCAACCACAAGCTGGGATTGATTATTTGCCCGGTAGTATGAGTTCGAATGGCGAACCCATTGCTACGAGTGTGATTGTTTCTGGTGGATATGAAGATGATGTTGATGAAGGTGATGTTATTATCTATTCTGGTCATGGTGGTCAGGATAAGAATTCAAGGCAGGTTTTTCATCAGAAGTTGGAAGGCGGGAACCTGGCTATGGAGAGAAGTATGCATTATGGGATTGAGGTTAGGGTGATTCGCGGTGTTCGGTATGAGGGTTCGTCTTCTGCTTCTGGTAAGGTTTATGTTTATGATGGCTTGTATAGGATTGTTGAATATTGGTTTGATGTTGGTAAGTCTGGTTTTGGTGTTTATAAGTTTAAGTTATGGAGGATTGATGGTCAAGCTAAGATGGGTAGTTTGATTCTTAAGGAAGCTCTTATGCTGAGGAGGGATCCTTTGTATTTTAAACCTATGTGTGTTTTTTCTCTTGATATATCGAACAGGAACGAGAATGTTGGTGTGAGGCTTTTTAATGATATTGATAGGAGTAATGATCCGATGTGTTTTGAGTATCTTCCGAGGGCTACGTTTCCGCCGTTTGTGTTTCATCACAGTGGGAGGGTGACGGGTTGTGAGTGCGTGAACGGTTGTGTCGAAGGATGCTTTTGTTTCATGAAGAACGGAAATGAGTTTCCGTATAGTCAAAGTGGGCTTCTCTTGAAAGGGAGACCGTTAGTCTTTGAATGCGGTCCTTTTTGTAGATGTCCGCCTCATTGTCGTAACCGCGTTACGCAAAATGGGCTAAAGAATAGGTTGGAAGTGTTTAGGTCTAAGGAGACTGGTTGGGGAGTTAGGTCTTTGGACCTTATTCAAGCTGGCTCTTTTATATGCGAATACACCGGGGTTGTTTTGACTAGGGAGCAAGCACAGATTTTGATCATGAATGGTGATTCATTGATCTATCCGCATCGGTTTTCGAATAGGTGGGAGGAATGGGGTGATTTATCTTTGGTAGACCCTACTTATGTGCGCCCGACGTATCCATCAATTCCTCCTTTAGATTTTGCTATGGATGTGTCGAGAATGAGGAATGTTGCTTGCTACATGAGTCATAGCTCAACTCCAAATGTGTTGGTTCAGTTTGTTCTATTTGATCACAACAATTTGATGTTCCCTCACCTTATGCTATTTGCAATGGAGAACATCCCTCCAATGAGAGAGTTCAGCCTTGATTATGGGGTAGCTGATGACGAGTTGACGGGCAAGCTCGCCGCTATATGTAACTGA 1974 0.4458 MNSQNPNPIFPSPPPGFHNPAPLLTPKQEPRDETPQQEEHQQPQQPNLNDLPNLNLNLNLNLDDIYEQETLPGFSNFNFPSEAYQTRFTTGLQQLENDDLDDPNSLAIVPVPEARQNYDYNAPAGAGEVAAQRQRRYKELVRVADLGLAEQRQFRDLVRRTRMVYDSLRVLALIEEEKRGDVRRVRSDLRASALMRNKGLWLNRDKRIVGPIPGICIGDVFLYRMELVVIGLHGQPQAGIDYLPGSMSSNGEPIATSVIVSGGYEDDVDEGDVIIYSGHGGQDKNSRQVFHQKLEGGNLAMERSMHYGIEVRVIRGVRYEGSSSASGKVYVYDGLYRIVEYWFDVGKSGFGVYKFKLWRIDGQAKMGSLILKEALMLRRDPLYFKPMCVFSLDISNRNENVGVRLFNDIDRSNDPMCFEYLPRATFPPFVFHHSGRVTGCECVNGCVEGCFCFMKNGNEFPYSQSGLLLKGRPLVFECGPFCRCPPHCRNRVTQNGLKNRLEVFRSKETGWGVRSLDLIQAGSFICEYTGVVLTREQAQILIMNGDSLIYPHRFSNRWEEWGDLSLVDPTYVRPTYPSIPPLDFAMDVSRMRNVACYMSHSSTPNVLVQFVLFDHNNLMFPHLMLFAMENIPPMREFSLDYGVADDELTGKLAAICN 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03802 657 ProSiteProfiles YDG domain profile. 210 359 IPR003105 -
Vifa3g03802 657 ProSiteProfiles Pre-SET domain profile. 438 496 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vifa3g03802 657 SMART G9a_1 205 363 IPR003105 -
Vifa3g03802 657 SMART set_7 499 648 IPR001214 GO:0005515
Vifa3g03802 657 Gene3D - 191 371 IPR036987 -
Vifa3g03802 657 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 54 657 IPR025794 GO:0016571
Vifa3g03802 657 Gene3D SET domain 372 652 IPR046341 -
Vifa3g03802 657 SMART preset_2 391 483 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vifa3g03802 657 SUPERFAMILY PUA domain-like 191 372 IPR015947 -
Vifa3g03802 657 MobiDBLite consensus disorder prediction 1 53 - -
Vifa3g03802 657 ProSiteProfiles SET domain profile. 499 642 IPR001214 GO:0005515
Vifa3g03802 657 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 94 643 - -
Vifa3g03802 657 MobiDBLite consensus disorder prediction 7 21 - -
Vifa3g03802 657 SUPERFAMILY SET domain 383 643 IPR046341 -
Vifa3g03802 657 MobiDBLite consensus disorder prediction 39 53 - -
Vifa3g03802 657 Pfam SET domain 510 642 IPR001214 GO:0005515
Vifa3g03802 657 Pfam Pre-SET motif 394 491 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Vifa3g03802 657 Pfam SAD/SRA domain 209 363 IPR003105 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03802 Vifa-Chr3 1115187291 1115189264 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03802 155 656 Su(var)3-9 homologs AT5G04940 37.115 3.10e-100 319
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vifa3g03802 SAD_SRA 1.1e-47 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03802 K11420 - gmx:100804592 921.768