Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03801 ATGTTTCTCAAGACTCTTGATGACAAAGAATGGGAAATACATTTGACTAAAAAGAATGATGATATTTGGATTAACAAGGGTTGGAAGGAATTCGCGACACATTATTCATTAGATCATGGACATATGCTGATGTTTAAATTCGAAAAAACCTCTCATTTTGAAGTGCATATATTCGACAAGAGTACCCTTGAAATTGAATATCATGTTTATGGTAATAATCAACAAGAATGTAACGACACAATTGGAAACTTGAATGAGCAAAATTCATGCAACAAGACTAGACCAAAACCACAAGTTTCAAGTTCTCAATCACATAAGAAATTGAGAGTCGACACAAATGAAGAAGTTGGAAGAAGTTTGAAATTGCAGAACTGGCCTAAACTTGTCCAAAAAGAGAAGGACGATTCCACCGAATACGTAAATGTGAAGCATTATCAGGAGCAGAAGAATTTTACTTCTAAAATTGAAAAAGCTTTGATCAGAGCCAGAAACTACAAATCTGAAAATCCCATTTTCATTATTGTCATGACATCTTCCTATACTAATCAATATATATATGTCCCTTTCGATTTCGAACAAAAGTATTTGAAGAAAAATCAAAGCGATATGGTCCTTCGGGTCTTGGATGACGATAGAACTTGGATTGTTAAATATTGTGAAAGAAGAATTAGTTCTGGATGGAGAATATTTGCATCTGATAATAATTTGAAAGTGGGAGATGTTTGTCTTTTCGAGATGATCAATTACGAAGCCTATTCTTTTCGAGTACTAGTTTTTCGAGTTGACGAATCAGTTCATGGAAATCAAATTAATTCGGTAGGAATCGCAAGAATCTCAAAAGTTGAAAGTAAACCTATTGTTTTACATAGAGGAATGAGAGCTACTCCAACAAATTCCTTGCGGGCTAATCCATCCGGCTTCACAGAAGATGTTGTGCTTGATGTTCGTATTTTCAGAGGCCGCAATAAGGCAATCGATTCGTGA 984 0.3486 MFLKTLDDKEWEIHLTKKNDDIWINKGWKEFATHYSLDHGHMLMFKFEKTSHFEVHIFDKSTLEIEYHVYGNNQQECNDTIGNLNEQNSCNKTRPKPQVSSSQSHKKLRVDTNEEVGRSLKLQNWPKLVQKEKDDSTEYVNVKHYQEQKNFTSKIEKALIRARNYKSENPIFIIVMTSSYTNQYIYVPFDFEQKYLKKNQSDMVLRVLDDDRTWIVKYCERRISSGWRIFASDNNLKVGDVCLFEMINYEAYSFRVLVFRVDESVHGNQINSVGIARISKVESKPIVLHRGMRATPTNSLRANPSGFTEDVVLDVRIFRGRNKAIDS 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03801 327 PANTHER B3 DOMAIN-CONTAINING 2 250 - -
Vifa3g03801 327 MobiDBLite consensus disorder prediction 86 115 - -
Vifa3g03801 327 SMART B3_2 171 262 IPR003340 GO:0003677
Vifa3g03801 327 Gene3D - 1 62 IPR015300 -
Vifa3g03801 327 Gene3D - 151 264 IPR015300 -
Vifa3g03801 327 CDD B3_DNA 170 260 IPR003340 GO:0003677
Vifa3g03801 327 ProSiteProfiles B3 DNA-binding domain profile. 170 262 IPR003340 GO:0003677
Vifa3g03801 327 SUPERFAMILY DNA-binding pseudobarrel domain 2 61 IPR015300 -
Vifa3g03801 327 SUPERFAMILY DNA-binding pseudobarrel domain 165 262 IPR015300 -
Vifa3g03801 327 ProSiteProfiles B3 DNA-binding domain profile. 1 61 IPR003340 GO:0003677
Vifa3g03801 327 MobiDBLite consensus disorder prediction 86 106 - -
Vifa3g03801 327 CDD B3_DNA 1 59 IPR003340 GO:0003677
Vifa3g03801 327 Pfam B3 DNA binding domain 2 60 IPR003340 GO:0003677
Vifa3g03801 327 Pfam B3 DNA binding domain 172 260 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03801 Vifa-Chr3 1114490971 1114492591 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03801 3 263 B3 DNA Binding Superfamily AT3G18990 24.516 6.48e-25 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa3g03801 B3 1.9e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03801 - - tpra:123902302 407.142