Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03800 ATGATCAACCAACAAAGTAAAAATATTTTTGCCGCTTCGACTTCAACAGTTCGGTTTTTTAAAATAATTACCACACAAAATATTCAAGATGGAAAAATAAGGCTTCCAAAGGGGTTTACTACAAAGCATGCCAATGATATGCTAAATCCTATATTTCTCATGACTCCGGATGACAAAAAATGGGAAATACATATTACTAAAGTTGATGAAGATTTTTGGTTTCAAAAGGGTTGGAAGGAATTTGTAACGTACTATTCATTAGATCATGGGAATATGATATTGTTTCAATTTGAGGAAAAATCTCATTTTGTGGTGCATGTATTTGGTAAGAGTACCCTTGAAATTCAATATCTTTGTCGTGACAATCAACATGAACAAAACAACATTGTCCAATCCAGTGATGAAGACTCAGTTGAAATCTTGAATACGTCAAATTCATCTAAAAAGAAGATTAGACAAAAATCACCAATTCTATGTCCTCAACCAACTAAGAAATTGAGAAATTACACAAATGAAGGTGTTGGAACAAGTACTAAGTTTCAAATTAGTGATGATACACTTGAAGGTGATGGAAAAGATTCGAAATTGTCCAATTTTTCTAAGCATTATATTCAAGCTAACGATGAGAACATAGAGGGTAACCCTAAATGTCAAAAAGAAGAGCAGGAGGAACAAACTTCTAAAATTAATGAAGCATTAAATAGAGCAAGAAATTTCAAATCTGAAAAGCCTTATTTCACGATTGTTATGAAATCTTCACATCTTTCTACTCAAATTTTGAAGATTCCAAAAGATCATGGATATCGTAAAGCCGTTGAAAGAATTACAAATCAAAAACTTATAGTTTGTCGAGAAGAAAAAGATTTGAAGAAAATTGAAAACCGTCTTGGTTGTGATCAAATTGAAGAACTCATTGAAAAAGCTAATGATGAATTGAAAGTAATTGACTATATGATTAAATAG 963 0.3115 MINQQSKNIFAASTSTVRFFKIITTQNIQDGKIRLPKGFTTKHANDMLNPIFLMTPDDKKWEIHITKVDEDFWFQKGWKEFVTYYSLDHGNMILFQFEEKSHFVVHVFGKSTLEIQYLCRDNQHEQNNIVQSSDEDSVEILNTSNSSKKKIRQKSPILCPQPTKKLRNYTNEGVGTSTKFQISDDTLEGDGKDSKLSNFSKHYIQANDENIEGNPKCQKEEQEEQTSKINEALNRARNFKSEKPYFTIVMKSSHLSTQILKIPKDHGYRKAVERITNQKLIVCREEKDLKKIENRLGCDQIEELIEKANDELKVIDYMIK 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03800 320 PANTHER B3 DOMAIN-CONTAINING 14 261 - -
Vifa3g03800 320 SUPERFAMILY DNA-binding pseudobarrel domain 13 111 IPR015300 -
Vifa3g03800 320 Pfam B3 DNA binding domain 19 110 IPR003340 GO:0003677
Vifa3g03800 320 ProSiteProfiles B3 DNA-binding domain profile. 18 111 IPR003340 GO:0003677
Vifa3g03800 320 Coils Coil 222 242 - -
Vifa3g03800 320 CDD B3_DNA 18 108 IPR003340 GO:0003677
Vifa3g03800 320 Pfam ETC complex I subunit conserved region 257 303 IPR006806 GO:0022904
Vifa3g03800 320 Gene3D - 11 112 IPR015300 -
Vifa3g03800 320 SMART B3_2 19 111 IPR003340 GO:0003677
Vifa3g03800 320 Gene3D - 224 297 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03800 Vifa-Chr3 1114237023 1114239038 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03800 19 255 B3 DNA Binding Superfamily AT3G18990 25.856 1.98e-20 89.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vifa3g03800 B3 1.2e-13 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03800 - - tpra:123895950 300.441