Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03781 ATGAATTATTTGAATTTGAATAATTACCAACAAAGAAGAGTGAATTTGCTGACTGGAGAATCTTCACATGGGGAGGGACTCTATGAACCAATTAATGTTTCTCAGAATAATTTTGAGGAAATTGATGATGATGTCATAGAAACTTCACCAAGAGAATTTGCTGAGGCAGTGGCCAATGCGAGAAGAAATCGTATGGTCAATGAAGTTGATTCGAATAGAGAAAATCACAGGATCTCAGACTTTTTTCTGCCTGACGGCCGCATTCTCCAACCAAATGATGACATGATTTATATAAATTTTGATTTCATTGCACATGAGTTAGCTGAAAAAGAGAAAGAAGCCGCAGAAGCTAAGAAAAAAGCATTTGAAACTCCCAAAGAGTCTCCTTATAAATGTCCAATATGTATGGATTCTATTGAGGAGGAAATGGCCACAAGGTGTGGCCATATCTTTTGCAAGTTCTGCATAAAAAAAGCAATTAAAGCACAAGGTAAATGTCCTGCATGTAGGGAACCGGTTACTTCGAGACAACTAAGAAGAGTGTTTCTTCCATCTCCAAATTAA 564 0.3706 MNYLNLNNYQQRRVNLLTGESSHGEGLYEPINVSQNNFEEIDDDVIETSPREFAEAVANARRNRMVNEVDSNRENHRISDFFLPDGRILQPNDDMIYINFDFIAHELAEKEKEAAEAKKKAFETPKESPYKCPICMDSIEEEMATRCGHIFCKFCIKKAIKAQGKCPACREPVTSRQLRRVFLPSPN 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03781 187 Pfam Zinc finger, C3HC4 type (RING finger) 131 169 - -
Vifa3g03781 187 ProSiteProfiles Zinc finger RING-type profile. 132 170 IPR001841 -
Vifa3g03781 187 Coils Coil 100 120 - -
Vifa3g03781 187 PANTHER ELFLESS, ISOFORM B 14 185 - -
Vifa3g03781 187 ProSitePatterns Zinc finger RING-type signature. 147 156 IPR017907 -
Vifa3g03781 187 SUPERFAMILY RING/U-box 131 175 - -
Vifa3g03781 187 SMART ring_2 132 169 IPR001841 -
Vifa3g03781 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 185 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03781 Vifa-Chr3 1106393296 1106396586 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03781 19 185 C3H Transcription Factor Family AT5G48655 37.143 2.36e-26 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03781 K22651 - cave:132188663 110.538