Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03779 ATGAATTATTTGAATTTGAATAATTACCAACAAAGAAGAGTGAATTTGCTGACCGGAGAATCTTCACATGGGGAGGGACTCTATGAACCAATTAATGTTTCTCAGAATAATTTTGAGGAAATTGATGATGATGTCATAGAAACTTCACCAAGAGAATTTGCTGAGGCAGTGGCCAATGCGAGAAGAAATCGTATGGTCAATGAAGTTGATTCGAATAGAGAAAATCACAGGATCTCAGACTTTTTTCTGCCTGACGGCCGCATTCTCCAACCATATGATGACATGATTTATATAAATTTTGATTACATTGCACATGAGTTAGCTGAAAAAGAGAAAGAAGCCGCGGAAGCTAAGAAAAGGGAACTTGAAACTCCCAAAGAGTCTCCCTATAAATGTCCAATATGTATGGATTCTATTGAGGAGGAAATGGCCACAAGGTGTGGTCATATCTTTTGTAAGTTCTGCATAAAGAAAGCAATTAAAGCACAAGGTAAATGTCCTGCATGTAGGGAAAGGGTTACTTCGAGACAATTAAGAAGGGTGTTTCTTCCATCTCCTAATTAA 564 0.3759 MNYLNLNNYQQRRVNLLTGESSHGEGLYEPINVSQNNFEEIDDDVIETSPREFAEAVANARRNRMVNEVDSNRENHRISDFFLPDGRILQPYDDMIYINFDYIAHELAEKEKEAAEAKKRELETPKESPYKCPICMDSIEEEMATRCGHIFCKFCIKKAIKAQGKCPACRERVTSRQLRRVFLPSPN 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03779 187 Coils Coil 105 125 - -
Vifa3g03779 187 Pfam Zinc finger, C3HC4 type (RING finger) 131 169 - -
Vifa3g03779 187 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 185 IPR013083 -
Vifa3g03779 187 ProSiteProfiles Zinc finger RING-type profile. 132 170 IPR001841 -
Vifa3g03779 187 PANTHER ELFLESS, ISOFORM B 14 185 - -
Vifa3g03779 187 ProSitePatterns Zinc finger RING-type signature. 147 156 IPR017907 -
Vifa3g03779 187 SMART ring_2 132 169 IPR001841 -
Vifa3g03779 187 SUPERFAMILY RING/U-box 131 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03779 Vifa-Chr3 1106274313 1106277689 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03779 19 185 C3H Transcription Factor Family AT5G48655 37.143 5.07e-27 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03779 K22651 - tpra:123891564 114.39