Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03777 ATGTCAGAAACACAAACACACATTGTTGCTGATGATTCTGAAGAGTTTCTCTCTTTGAGTTTAGGAATAGGATCTTCATCCAAATCCCTCGAAAAGAAGGAATATGGATGCCGATTTTGTCACAGGAAGTTCTCGAGTTTTCAAGCTTTAGGAGGACACCAGAACGCTCATAGGCGTGAAAAGATGCTTTCAAAAATCGAAGAATTTCAAATGGAAAATTATGCTCAACATTTTTATCCTTACTATGTAGGGTCAACTTTTTATCATGGAATTGGAAATCCATCATGGCCTCAATATGCCATGATGAATAATTCTGGTTGGAATAATCCAATTCCAATGAATAATAATGTGGAATTTGGAAATTATAATGAAGCTAATAATCAGATGCAAGTTCCTCCATATGGTGCTGGTCTTAACAATGTCCTAATGGAAAATAATAATCCTTATGTCCCAAATACTCATCAAATTTCATCCTCACTACCTGATTTGCGCCTCAGACTTTAA 504 0.3571 MSETQTHIVADDSEEFLSLSLGIGSSSKSLEKKEYGCRFCHRKFSSFQALGGHQNAHRREKMLSKIEEFQMENYAQHFYPYYVGSTFYHGIGNPSWPQYAMMNNSGWNNPIPMNNNVEFGNYNEANNQMQVPPYGAGLNNVLMENNNPYVPNTHQISSSLPDLRLRL 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03777 167 Gene3D Classic Zinc Finger 11 79 - -
Vifa3g03777 167 ProSiteProfiles Zinc finger C2H2 type domain profile. 35 62 IPR013087 -
Vifa3g03777 167 SUPERFAMILY beta-beta-alpha zinc fingers 31 62 IPR036236 -
Vifa3g03777 167 ProSitePatterns Zinc finger C2H2 type domain signature. 37 57 IPR013087 -
Vifa3g03777 167 PANTHER ZINC FINGER PROTEIN 5 26 101 IPR044299 GO:0010090
Vifa3g03777 167 Pfam C2H2-type zinc finger 35 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03777 Vifa-Chr3 1105525359 1105525862 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03777 27 90 C2H2 Transcription Factor Family AT5G10970 45.312 2.06e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03777 - - psat:127095023 244.202