Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03775 ATGGCCGGAGTTCCGTTTCCGTCGAACCTTCTACCGTCCGACGGGAGTCCCGAATGGCTAAACAAATCCGACAACGCGTGGCAACTAATGGCCGCGACGTTAGTCGGACTGCAAAGTGTTCCGGGACTAATAATATTATACGGTGGCGCGGTGAAAAAGAAATGGGCAGTGAATTCAGCATTCATGACACTCTATGCATTTGCATGTGTGTTTTTCTGTTGGGTCATTTGGGGTTATAGAATGTCATTTGGTGATAGGCTTTTACCATTTTGGGGTAAACCAGCACTTGCACTTGATGAAAAGTATCTTTTCAAACAAGCTTTTTTAGGAGCTTTTCCTATTGCTACTATGGTTTATTTTCAGTGTGTTTTTGCTGCTATTACTTTGATTTTGATTGCTGGTGCTTTGCTTGGAAGAATGAACTTCTATGCTTGGATGTTGTTTGTTCCTTTATGGCTCACTTTTTCTTATACTATTACTGCTTTTAGTATTTGGAGTCCTAATGGATTTCTTTCTAAATTGGGGATCATTGATTACTCTGGTGGTTATGTTATTCATTTATCTTCCGGCGTCGCTGGTTTCACCGCCGCTTATTGGGTTGGACCGCGACTAAACAAAGATAGGGAAAGGTTTCCACCAAACAATCTACTTCTTATGTTGGCTGGAGCAGGACTGTTGTGGATGGGATGGACAGGTTTCAATGGAGGAGATCCTTACTCAGTTGGACTAGATGCTTCCTTGGCTGTCTTGAACACACATGCTTGCACTGCTACTAGCTTGCTTACTTGGGTTTTCCTTGATGTCATTTTCTTCAGAAAGCCTTCTGTTATTGGTGCTGTTCAAGGCATGATTACTGGTTTGGTTTGCATCACTCCAGCTGCAGGTGTCGTACAAGGTTGGGCAGCACTTATAATGGGACTATTCTCCGGCTCAATTCCATGGTTTACCATGATGGTAATCCACAAGAGATCAAAGCTACTTCAAAAAGTAGACGACACAATGGCAGTGTTACACACTCATGCAATTGCAGGAAGTCTTGGAGGAATTCTCACTGGTCTATTTGCCGAACCAAAACTAAACTACTTGTTCTACGGTGCTTATAGCAAATACGTTGGTCTTTTATACGGAATCCAAATGAACATAGCGAGCACCGGATTCAGACAAATAGGAATCCAACTCCTTGGAATTTTGTTTGTTATCTTTGTTAATGTTGTTAGCACGAGTTTGATATGTCTTCTGATTCGAGTCTTTGTTCCGTTGAGAATGTCCGAAGAGGATATGGAGATTGGTGATGAGGCTGCTCATGGTGAAGAGGCCTATGCAATTTGGGGTCAAGGTGATAAACTTGAGAATTCGAGTTCGAAATATGCAAGTTCTTTGTATGAAGATGTTGAAGTTGCTGCTACCAAGAAGAATAAGCGTAGTAGTCAGATTGAGATGATGTGA 1446 0.4205 MAGVPFPSNLLPSDGSPEWLNKSDNAWQLMAATLVGLQSVPGLIILYGGAVKKKWAVNSAFMTLYAFACVFFCWVIWGYRMSFGDRLLPFWGKPALALDEKYLFKQAFLGAFPIATMVYFQCVFAAITLILIAGALLGRMNFYAWMLFVPLWLTFSYTITAFSIWSPNGFLSKLGIIDYSGGYVIHLSSGVAGFTAAYWVGPRLNKDRERFPPNNLLLMLAGAGLLWMGWTGFNGGDPYSVGLDASLAVLNTHACTATSLLTWVFLDVIFFRKPSVIGAVQGMITGLVCITPAAGVVQGWAALIMGLFSGSIPWFTMMVIHKRSKLLQKVDDTMAVLHTHAIAGSLGGILTGLFAEPKLNYLFYGAYSKYVGLLYGIQMNIASTGFRQIGIQLLGILFVIFVNVVSTSLICLLIRVFVPLRMSEEDMEIGDEAAHGEEAYAIWGQGDKLENSSSKYASSLYEDVEVAATKKNKRSSQIEMM 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03775 481 Gene3D Ammonium transporter AmtB like domains 12 444 IPR029020 -
Vifa3g03775 481 FunFam Ammonium transporter 9 443 - -
Vifa3g03775 481 PANTHER AMMONIUM TRANSPORTER MEP2 8 452 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vifa3g03775 481 NCBIfam ammonium transporter 24 440 IPR001905 GO:0008519|GO:0016020|GO:0072488
Vifa3g03775 481 PRINTS Rhesus blood group protein signature 121 137 IPR002229 GO:0005886
Vifa3g03775 481 PRINTS Rhesus blood group protein signature 217 235 IPR002229 GO:0005886
Vifa3g03775 481 PRINTS Rhesus blood group protein signature 248 270 IPR002229 GO:0005886
Vifa3g03775 481 SUPERFAMILY Ammonium transporter 19 422 - -
Vifa3g03775 481 ProSitePatterns Ammonium transporters signature. 178 203 IPR018047 GO:0008519|GO:0016020|GO:0072488
Vifa3g03775 481 Pfam Ammonium Transporter Family 26 440 IPR024041 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03775 Vifa-Chr3 1104928221 1104930045 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03775 114 467 Inorganic Solute Cotransporters AT2G38290 62.429 3.50e-145 418
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03775 K03320 - gmx:100787856 832.017