Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa3g03774 | ATGGTCAATCAATCTGAATCCAAAGTTTGTGATAATGCAATTCCACCTCCAAAAATTGAAATCAAGAGGGGGCATGAGGATGAAGATCAGAATGAAGTGGTTGCAAAGAAGCAGAAAATAGACGAGGTGGTTGTAAATCAAGAGGTTAAGGAGGAAAATAATTCAGACTATTCTGAACATGACAAGAAACTTCAAGCTAAAAATGAATCTGATGCTGGTTGTGGATCTTTGAAATCATCAGATGATGGTGTCTCAGATCCTGACTCTCACGGCAGCTCTGACGAGGATAAGCCCGAAGATTTGGAGAGTCATGAGAACAATGAGGAAGAAATAGAGGGAAAAGTCTCCAAAACAGCTCAGGAAAGGCACGATACTCCAGTCAGTCTAAACGAAAAATATGCTGCTCCGAAGACAATATTTGTTAAAAACTTGTCATATAGTGTGGAGCGGCCTGATATGGAAGATATTTTCAAAGATTGTGGTGAAGTTGTTGGTGTTCGATTCAACACAGATAGTGAAGGGAGGTTTAAAGGCCATGGATATGTCGAGTTTGGAACAGCAGAAGCAGCAAAAAAAGCCTTGGAACTGAATAATACAGAGCTATTGTATCGCCGCATCAAAATTGAGATAGCTCGAGAAAAAGGTGAATATCCCCCATATAGAAGCTCATTCCATACGGGTGGAGATCTTCAGTCTCACACTGTAAATGTAAAGGGCTTTGACGCATCTCTTGTAGAAAGCAAGCCTAAAAGCCCAGCTACAACAAATGAAACAAATGGTGCATCTAAGACCATATATGTCAGAAACTTGTCATACATCGTGGAACGAGCTGATATGGAAGAAATTTTCAAAGATTGTGGAGAAATTGTTGATGTTCGTCTCCATACAGACCGCGACGGGAATTTTAAAGGCCATGGACATGTTCAGTTTGCAACAGCAGAAGCAGCACAAAAGGCTCTTGCGTTCAACAAGAAAGTATATTTTAACCGTCTCATGTTTGTTGGTTTAGCTTTGGAAAGGGGTAAATATGCCTCCAATGGAAGCAGCTGGTCCTGGAGCAACTCATTGCATAAGGATGAAAAATTACAGTCTCAAACTGTACCTGTGAAGTGCTCTGATACATCTCTTGCGGACGGCAAGTTGAGTTGTGCAAAGGAGGTTAAGGATGTAGAGATGTTTGATGCTGCCTCTGCTGAGAAAAAAATTCCTGAAACCTCAGCTACACGAAAAGAGGAAAATGCTGCATCCAAAACAGTATGTGTTAGAAACTTGTCATTCGATGTGGAACGGGCTGAAATTGAAAATATTTTCAAAGATTGTGGAGAAGTTGCTGACGTCCGTCTCCATGTGGATGTCGAGTTTGCAACCGCAGAAGCAGCAGAAAAGGCTCTTGCGTTGGATTACACAAGATTGACGAACCATCCCATCAAAGTTGGTATGGCTCCAGAAGAGGGTGAATGTTTCCCCAATAGAAGCAGCGTGAGCATTCCATTCTCGAAGTGCGAAACTTTGCAGCCTCTAACTGTATTTGTGATCGGATTTGATACTTCCCTTCCCGAAGAAAAGATAAAAGCTAGCCTGAAGAATCATTTCAGTCCTTGTGGAGAGATTACGAGGATCTCATTACCGAGATTTCATGATTCTTGTAATATTAAGGGGTTTGCTCATTTGGACTTCAAGGATATTGAAGGCTATAAGAAGGCACTACTACTTGATCAAACTGCATTTGGAGAATTTTGGTTGTCAGTTGAAAAAGCAAAACCAAAGCAAAGACGTGATAATCATCAGGGTATAGGTGGTAGCAGAGATGGTTATCACGGTGGTGGAAGGGATGGCAGAGACTATGGGGGTGGGTCGGGTTGGGGGAGAAGTCATGGTGCTGGGAGACACTATTAG | 1896 | 0.4198 | MVNQSESKVCDNAIPPPKIEIKRGHEDEDQNEVVAKKQKIDEVVVNQEVKEENNSDYSEHDKKLQAKNESDAGCGSLKSSDDGVSDPDSHGSSDEDKPEDLESHENNEEEIEGKVSKTAQERHDTPVSLNEKYAAPKTIFVKNLSYSVERPDMEDIFKDCGEVVGVRFNTDSEGRFKGHGYVEFGTAEAAKKALELNNTELLYRRIKIEIAREKGEYPPYRSSFHTGGDLQSHTVNVKGFDASLVESKPKSPATTNETNGASKTIYVRNLSYIVERADMEEIFKDCGEIVDVRLHTDRDGNFKGHGHVQFATAEAAQKALAFNKKVYFNRLMFVGLALERGKYASNGSSWSWSNSLHKDEKLQSQTVPVKCSDTSLADGKLSCAKEVKDVEMFDAASAEKKIPETSATRKEENAASKTVCVRNLSFDVERAEIENIFKDCGEVADVRLHVDVEFATAEAAEKALALDYTRLTNHPIKVGMAPEEGECFPNRSSVSIPFSKCETLQPLTVFVIGFDTSLPEEKIKASLKNHFSPCGEITRISLPRFHDSCNIKGFAHLDFKDIEGYKKALLLDQTAFGEFWLSVEKAKPKQRRDNHQGIGGSRDGYHGGGRDGRDYGGGSGWGRSHGAGRHY | 631 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa3g03774 | 631 | Coils | Coil | 101 | 121 | - | - | |
Vifa3g03774 | 631 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 137 | 213 | IPR000504 | GO:0003723 | |
Vifa3g03774 | 631 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 517 | 576 | IPR000504 | GO:0003723 | |
Vifa3g03774 | 631 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 419 | 477 | IPR000504 | GO:0003723 | |
Vifa3g03774 | 631 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 139 | 207 | IPR000504 | GO:0003723 | |
Vifa3g03774 | 631 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 265 | 330 | IPR000504 | GO:0003723 | |
Vifa3g03774 | 631 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 507 | 588 | IPR000504 | GO:0003723 | |
Vifa3g03774 | 631 | MobiDBLite | consensus disorder prediction | 83 | 100 | - | - | |
Vifa3g03774 | 631 | MobiDBLite | consensus disorder prediction | 107 | 128 | - | - | |
Vifa3g03774 | 631 | Gene3D | - | 235 | 347 | IPR012677 | - | |
Vifa3g03774 | 631 | Gene3D | - | 359 | 486 | IPR012677 | - | |
Vifa3g03774 | 631 | MobiDBLite | consensus disorder prediction | 1 | 129 | - | - | |
Vifa3g03774 | 631 | Gene3D | - | 500 | 626 | IPR012677 | - | |
Vifa3g03774 | 631 | Gene3D | - | 99 | 234 | IPR012677 | - | |
Vifa3g03774 | 631 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 417 | 483 | IPR000504 | GO:0003723 | |
Vifa3g03774 | 631 | MobiDBLite | consensus disorder prediction | 18 | 68 | - | - | |
Vifa3g03774 | 631 | MobiDBLite | consensus disorder prediction | 590 | 631 | - | - | |
Vifa3g03774 | 631 | SUPERFAMILY | RNA-binding domain, RBD | 410 | 486 | IPR035979 | GO:0003676 | |
Vifa3g03774 | 631 | SUPERFAMILY | RNA-binding domain, RBD | 505 | 620 | IPR035979 | GO:0003676 | |
Vifa3g03774 | 631 | SUPERFAMILY | RNA-binding domain, RBD | 255 | 348 | IPR035979 | GO:0003676 | |
Vifa3g03774 | 631 | SMART | rrm1_1 | 418 | 479 | IPR000504 | GO:0003723 | |
Vifa3g03774 | 631 | SMART | rrm1_1 | 264 | 335 | IPR000504 | GO:0003723 | |
Vifa3g03774 | 631 | SMART | rrm1_1 | 138 | 209 | IPR000504 | GO:0003723 | |
Vifa3g03774 | 631 | SMART | rrm1_1 | 508 | 584 | IPR000504 | GO:0003723 | |
Vifa3g03774 | 631 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 263 | 339 | IPR000504 | GO:0003723 | |
Vifa3g03774 | 631 | PANTHER | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H | 360 | 549 | - | - | |
Vifa3g03774 | 631 | SUPERFAMILY | RNA-binding domain, RBD | 129 | 228 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa3g03774 | Vifa-Chr3 | 1104867405 | 1104891794 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa3g03774 | 138 | 481 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 23.058 | 1.88e-11 | 65.1 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa3g03774 | - | - | tpra:123897326 | 857.055 |