Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03773 ATGGTCAATCAATCTGAATCCAAAGTTTGTGATAATGCAATTCCACCTCCAAAAATTGAAATCAAGAGGGGGCATGAGGATGAAGATCAGAATGAAGTGGTTGCAAAGAAGCAGAAAATAGACGAGAAACTTCAAGCTAAAAATGAATCTGATGCTGGTTGTGGATCTTTGAAATCATCAGATGATGGTGTCTCAGATCCTGACTCTCACGGCAGCTCTGACGAGGATAAGCCCGAAGATTTGGAGAGTCATGAGAACAATGAGGAAGAAATAGAGGGAAAAGTCTCCAAAACAGCTCAGGAAAGGCACGATACTCCAGTCAGTCTAAACGAAAAATATGCTGCTCCGAAGACAATATTTGTTAAAAACTTGTCATATAGTGTGGAGCGGCCTGATATGGAAGATATTTTCAAAGATTGTGGTGAAGTTGTTGGTGTTCGATTCAACACAGATAGTGAAGGGAGGTTTAAAGGCCATGGATATGTCGAGTTTGGAACAGCAGAAGCAGCAAAAAAAGCCTTGGAACTGAATAATACAGAGCTATTGTATCGCCGCATCAAAATTGAGATAGCTCGAGAAAAAGGTGAATATCCCCCATATAGAAGCTCATTCCATACGGGTGGAGATCTTCAGTCTCACACTGTAAATGTAAAGGGCTTTGACGCATCTCTTGTAGAAAGCAAGCCTAAAAGCCCAGCTACAACAAATGAAACAAATGGTGCATCTAAGACCATATATGTCAGAAACTTGTCATACATCGTGGAACGAGCTGATATGGAAGAAATTTTCAAAGATTGTGGAGAAATTGTTGATGTTCGTCTCCATACAGACCGCGACGGGAATTTTAAAGGCCATGGACATGTTCAGTTTGCAACAGCAGAAGCAGCACAAAAGGCTCTTGCGTTCAACAAGAAAGTATATTTTAACCGTCTCATGTTTGTTGGTTTAGCTTTGGAAAGGGGTAAATATGCCTCCAATGGAAGCAGCTGGTCCTGGAGCAACTCATTGCATAAGGATGAAAAATTACAGTCTCAAACTGTACCTGTGAAGTGCTCTGATACATCTCTTGCGGACGGCAAGTTGAGTTGTGCAAAGGAGGTTAAGGATGTAGAGATGTTTGATGCTGCCTCTGCTGAGAAAAAAATTCCTGAAACCTCAGCTACACGAAAAGAGGAAAATGCTGCATCCAAAACAGTATGTGTTAGAAACTTGTCATTCGATGTGGAACGGGCTGAAATTGAAAATATTTTCAAAGATTGTGGAGAAGTTGCTGACGTCCGTCTCCATGTGGATGTCGAGTTTGCAACCGCAGAAGCAGCAGAAAAGGCTCTTGCGTTGGATTACACAAGATTGACGAACCATCCCATCAAAGTTGGTATGGCTCCAGAAGAGGGTGAATGTTTCCCCAATAGAAGCGTGAGCATTCCATTCTCGAAGTGCGAAACTTTGCAGCCTCTAACTGTATTTGTGATCGGATTTGATACTTCCCTTCCCGAAGAAAAGATAAAAGCTAGCCTGAAGAATCATTTCAGTCCTTGTGGAGAGATTACGAGGATCTCATTACCGAGATTTCATGATTCTTGTAATATTAAGGGGTTTGCTCATTTGGACTTCAAGGATATTGAAGGCTATAAGAAGGCACTACTACTTGATCAAACTGCATTTGGAGAATTTTGGTTGTCAGTTGAAAAAGCAAAACCAAAGCAAAGACGTGATAATCATCAGGGTATAGGTGGTAGCAGAGATGGTTATCACGGTGGTGGAAGGGATGGCAGAGACTATGGGGGTGGGTCGGGTTGGGGGAGAAGTCATGGTGCTGGGAGACACTATTAG 1833 0.4217 MVNQSESKVCDNAIPPPKIEIKRGHEDEDQNEVVAKKQKIDEKLQAKNESDAGCGSLKSSDDGVSDPDSHGSSDEDKPEDLESHENNEEEIEGKVSKTAQERHDTPVSLNEKYAAPKTIFVKNLSYSVERPDMEDIFKDCGEVVGVRFNTDSEGRFKGHGYVEFGTAEAAKKALELNNTELLYRRIKIEIAREKGEYPPYRSSFHTGGDLQSHTVNVKGFDASLVESKPKSPATTNETNGASKTIYVRNLSYIVERADMEEIFKDCGEIVDVRLHTDRDGNFKGHGHVQFATAEAAQKALAFNKKVYFNRLMFVGLALERGKYASNGSSWSWSNSLHKDEKLQSQTVPVKCSDTSLADGKLSCAKEVKDVEMFDAASAEKKIPETSATRKEENAASKTVCVRNLSFDVERAEIENIFKDCGEVADVRLHVDVEFATAEAAEKALALDYTRLTNHPIKVGMAPEEGECFPNRSVSIPFSKCETLQPLTVFVIGFDTSLPEEKIKASLKNHFSPCGEITRISLPRFHDSCNIKGFAHLDFKDIEGYKKALLLDQTAFGEFWLSVEKAKPKQRRDNHQGIGGSRDGYHGGGRDGRDYGGGSGWGRSHGAGRHY 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03773 610 Coils Coil 81 101 - -
Vifa3g03773 610 SUPERFAMILY RNA-binding domain, RBD 485 599 IPR035979 GO:0003676
Vifa3g03773 610 SUPERFAMILY RNA-binding domain, RBD 390 470 IPR035979 GO:0003676
Vifa3g03773 610 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 397 463 IPR000504 GO:0003723
Vifa3g03773 610 SUPERFAMILY RNA-binding domain, RBD 109 208 IPR035979 GO:0003676
Vifa3g03773 610 Gene3D - 479 605 IPR012677 -
Vifa3g03773 610 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 193 IPR000504 GO:0003723
Vifa3g03773 610 SUPERFAMILY RNA-binding domain, RBD 235 328 IPR035979 GO:0003676
Vifa3g03773 610 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 339 527 - -
Vifa3g03773 610 MobiDBLite consensus disorder prediction 63 80 - -
Vifa3g03773 610 MobiDBLite consensus disorder prediction 87 108 - -
Vifa3g03773 610 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 486 567 IPR000504 GO:0003723
Vifa3g03773 610 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 319 IPR000504 GO:0003723
Vifa3g03773 610 Gene3D - 20 199 IPR012677 -
Vifa3g03773 610 Gene3D - 213 327 IPR012677 -
Vifa3g03773 610 Gene3D - 339 466 IPR012677 -
Vifa3g03773 610 SMART rrm1_1 398 459 IPR000504 GO:0003723
Vifa3g03773 610 SMART rrm1_1 244 315 IPR000504 GO:0003723
Vifa3g03773 610 SMART rrm1_1 487 563 IPR000504 GO:0003723
Vifa3g03773 610 SMART rrm1_1 118 189 IPR000504 GO:0003723
Vifa3g03773 610 MobiDBLite consensus disorder prediction 1 109 - -
Vifa3g03773 610 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 310 IPR000504 GO:0003723
Vifa3g03773 610 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 399 457 IPR000504 GO:0003723
Vifa3g03773 610 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 187 IPR000504 GO:0003723
Vifa3g03773 610 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 496 555 IPR000504 GO:0003723
Vifa3g03773 610 MobiDBLite consensus disorder prediction 569 610 - -
Vifa3g03773 610 MobiDBLite consensus disorder prediction 18 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03773 Vifa-Chr3 1104867405 1104891794 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03773 118 461 Eukaryotic Initiation Factors Gene Family AT4G34110 23.058 1.36e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03773 - - tpra:123897326 825.083