Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03772 ATGGTCAATCAATCTGAATCCAAAGTTTGTGATAATGCAATTCCACCTCCAAAAATTGAAATCAAGAGGGGGCATGAGGATGAAGATCAGAATGAAGTGGTTGCAAAGAAGCAGAAAATAGACGAGGTGGTTGTAAATCAAGAGGTTAAGGAGGAAAATAATTCAGACTATTCTGAACATGACAAGAAACTTCAAGCTAAAAATGAATCTGATGCTGGTTGTGGATCTTTGAAATCATCAGATGATGGTGTCTCAGATCCTGACTCTCACGGCAGCTCTGACGAGGATAAGCCCGAAGATTTGGAGAGTCATGAGAACAATGAGGAAGAAATAGAGGGAAAAGTCTCCAAAACAGCTCAGGAAAGGCACGATACTCCAGTCAGTCTAAACGAAAAATATGCTGCTCCGAAGACAATATTTGTTAAAAACTTGTCATATAGTGTGGAGCGGCCTGATATGGAAGATATTTTCAAAGATTGTGGTGAAGTTGTTGGTGTTCGATTCAACACAGATAGTGAAGGGAGGTTTAAAGGCCATGGATATGTCGAGTTTGGAACAGCAGAAGCAGCAAAAAAAGCCTTGGAACTGAATAATACAGAGCTATTGTATCGCCGCATCAAAATTGAGATAGCTCGAGAAAAAGGTGAATATCCCCCATATAGAAGCTCATTCCATACGGGTGGAGATCTTCAGTCTCACACTGTAAATGTAAAGGGCTTTGACGCATCTCTTGTAGAAAGCAAGCCTAAAAGCCCAGCTACAACAAATGAAACAAATGGTGCATCTAAGACCATATATGTCAGAAACTTGTCATACATCGTGGAACGAGCTGATATGGAAGAAATTTTCAAAGATTGTGGAGAAATTGTTGATGTTCGTCTCCATACAGACCGCGACGGGAATTTTAAAGGCCATGGACATGTTCAGTTTGCAACAGCAGAAGCAGCACAAAAGGCTCTTGCGTTCAACAAGAAAGTATATTTTAACCGTCTCATGTTTGTTGGTTTAGCTTTGGAAAGGGGTAAATATGCCTCCAATGGAAGCTGGTCCTGGAGCAACTCATTGCATAAGGATGAAAAATTACAGTCTCAAACTGTACCTGTGAAGTGCTCTGATACATCTCTTGCGGACGGCAAGTTGAGTTGTGCAAAGGAGGTTAAGGATGTAGAGATGTTTGATGCTGCCTCTGCTGAGAAAAAAATTCCTGAAACCTCAGCTACACGAAAAGAGGAAAATGCTGCATCCAAAACAGTATGTGTTAGAAACTTGTCATTCGATGTGGAACGGGCTGAAATTGAAAATATTTTCAAAGATTGTGGAGAAGTTGCTGACGTCCGTCTCCATGTGGATGTCGAGTTTGCAACCGCAGAAGCAGCAGAAAAGGCTCTTGCGTTGGATTACACAAGATTGACGAACCATCCCATCAAAGTTGGTATGGCTCCAGAAGAGGGTGAATGTTTCCCCAATAGAAGCGTGAGCATTCCATTCTCGAAGTGCGAAACTTTGCAGCCTCTAACTGTATTTGTGATCGGATTTGATACTTCCCTTCCCGAAGAAAAGATAAAAGCTAGCCTGAAGAATCATTTCAGTCCTTGTGGAGAGATTACGAGGATCTCATTACCGAGATTTCATGATTCTTGTAATATTAAGGGGTTTGCTCATTTGGACTTCAAGGATATTGAAGGCTATAAGAAGGCACTACTACTTGATCAAACTGCATTTGGAGAATTTTGGTTGTCAGTTGAAAAAGCAAAACCAAAGCAAAGACGTGATAATCATCAGGGTATAGGTGGTAGCAGAGATGGTTATCACGGTGGTGGAAGGGATGGCAGAGACTATGGGGGTGGGTCGGGTTGGGGGAGAAGTCATGGTGCTGGGAGACACTATTAG 1890 0.419 MVNQSESKVCDNAIPPPKIEIKRGHEDEDQNEVVAKKQKIDEVVVNQEVKEENNSDYSEHDKKLQAKNESDAGCGSLKSSDDGVSDPDSHGSSDEDKPEDLESHENNEEEIEGKVSKTAQERHDTPVSLNEKYAAPKTIFVKNLSYSVERPDMEDIFKDCGEVVGVRFNTDSEGRFKGHGYVEFGTAEAAKKALELNNTELLYRRIKIEIAREKGEYPPYRSSFHTGGDLQSHTVNVKGFDASLVESKPKSPATTNETNGASKTIYVRNLSYIVERADMEEIFKDCGEIVDVRLHTDRDGNFKGHGHVQFATAEAAQKALAFNKKVYFNRLMFVGLALERGKYASNGSWSWSNSLHKDEKLQSQTVPVKCSDTSLADGKLSCAKEVKDVEMFDAASAEKKIPETSATRKEENAASKTVCVRNLSFDVERAEIENIFKDCGEVADVRLHVDVEFATAEAAEKALALDYTRLTNHPIKVGMAPEEGECFPNRSVSIPFSKCETLQPLTVFVIGFDTSLPEEKIKASLKNHFSPCGEITRISLPRFHDSCNIKGFAHLDFKDIEGYKKALLLDQTAFGEFWLSVEKAKPKQRRDNHQGIGGSRDGYHGGGRDGRDYGGGSGWGRSHGAGRHY 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03772 629 Coils Coil 101 121 - -
Vifa3g03772 629 Gene3D - 358 485 IPR012677 -
Vifa3g03772 629 Gene3D - 235 346 IPR012677 -
Vifa3g03772 629 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 137 213 IPR000504 GO:0003723
Vifa3g03772 629 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 416 482 IPR000504 GO:0003723
Vifa3g03772 629 SMART rrm1_1 417 478 IPR000504 GO:0003723
Vifa3g03772 629 SMART rrm1_1 264 335 IPR000504 GO:0003723
Vifa3g03772 629 SMART rrm1_1 506 582 IPR000504 GO:0003723
Vifa3g03772 629 SMART rrm1_1 138 209 IPR000504 GO:0003723
Vifa3g03772 629 SUPERFAMILY RNA-binding domain, RBD 255 349 IPR035979 GO:0003676
Vifa3g03772 629 MobiDBLite consensus disorder prediction 588 629 - -
Vifa3g03772 629 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 515 574 IPR000504 GO:0003723
Vifa3g03772 629 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 418 476 IPR000504 GO:0003723
Vifa3g03772 629 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 139 207 IPR000504 GO:0003723
Vifa3g03772 629 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 265 330 IPR000504 GO:0003723
Vifa3g03772 629 MobiDBLite consensus disorder prediction 83 100 - -
Vifa3g03772 629 MobiDBLite consensus disorder prediction 107 128 - -
Vifa3g03772 629 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 505 586 IPR000504 GO:0003723
Vifa3g03772 629 SUPERFAMILY RNA-binding domain, RBD 409 489 IPR035979 GO:0003676
Vifa3g03772 629 MobiDBLite consensus disorder prediction 1 129 - -
Vifa3g03772 629 SUPERFAMILY RNA-binding domain, RBD 504 618 IPR035979 GO:0003676
Vifa3g03772 629 MobiDBLite consensus disorder prediction 18 68 - -
Vifa3g03772 629 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 361 546 - -
Vifa3g03772 629 Gene3D - 99 234 IPR012677 -
Vifa3g03772 629 Gene3D - 498 624 IPR012677 -
Vifa3g03772 629 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 263 339 IPR000504 GO:0003723
Vifa3g03772 629 SUPERFAMILY RNA-binding domain, RBD 129 228 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03772 Vifa-Chr3 1104867405 1104891794 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03772 139 380 Eukaryotic Initiation Factors Gene Family AT4G34110 25.820 1.26e-13 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03772 - - tpra:123897326 858.211