Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03771 ATGGTCAATCAATCTGAATCCAAAGTTTGTGATAATGCAATTCCACCTCCAAAAATTGAAATCAAGAGGGGGCATGAGGATGAAGATCAGAATGAAGTGGTTGCAAAGAAGCAGAAAATAGACGAGGTGGTTGTAAATCAAGAGGTTAAGGAGGAAAATAATTCAGACTATTCTGAACATGACAAGAAACTTCAAGCTAAAAATGAATCTGATGCTGGTTGTGGATCTTTGAAATCATCAGATGATGGTGTCTCAGATCCTGACTCTCACGGCAGCTCTGACGAGGATAAGCCCGAAGATTTGGAGAGTCATGAGAACAATGAGGAAGAAATAGAGGGAAAAGTCTCCAAAACAGCTCAGGAAAGGCACGATACTCCAGTCAGTCTAAACGAAAAATATGCTGCTCCGAAGACAATATTTGTTAAAAACTTGTCATATAGTGTGGAGCGGCCTGATATGGAAGATATTTTCAAAGATTGTGGTGAAGTTGTTGGTGTTCGATTCAACACAGATAGTGAAGGGAGGTTTAAAGGCCATGGATATGTCGAGTTTGGAACAGCAGAAGCAGCAAAAAAAGCCTTGGAACTGAATAATACAGAGCTATTGTATCGCCGCATCAAAATTGAGATAGCTCGAGAAAAAGGTGAATATCCCCCATATAGAAGCTCATTCCATACGGGTGGAGATCTTCAGTCTCACACTGTAAATGTAAAGGGCTTTGACGCATCTCTTGTAGAAAGCAAGCCTAAAAGCCCAGCTACAACAAATGAAACAAATGGTGCATCTAAGACCATATATGTCAGAAACTTGTCATACATCGTGGAACGAGCTGATATGGAAGAAATTTTCAAAGATTGTGGAGAAATTGTTGATGTTCGTCTCCATACAGACCGCGACGGGAATTTTAAAGGCCATGGACATGTTCAGTTTGCAACAGCAGAAGCAGCACAAAAGGCTCTTGCGTTCAACAAGAAAGTATATTTTAACCGTCTCATGTTTGTTGGTTTAGCTTTGGAAAGGGGTAAATATGCCTCCAATGGAAGCAGCTGGTCCTGGAGCAACTCATTGCATAAGGATGAAAAATTACAGTCTCAAACTGTACCTGTGAAGTGCTCTGATACATCTCTTGCGGACGGCAAGTTGAGTTGTGCAAAGGAGGTTAAGGATGTAGAGATGTTTGATGCTGCCTCTGCTGAGAAAAAAATTCCTGAAACCTCAGCTACACGAAAAGAGGAAAATGCTGCATCCAAAACAGTATGTGTTAGAAACTTGTCATTCGATGTGGAACGGGCTGAAATTGAAAATATTTTCAAAGATTGTGGAGAAGTTGCTGACGTCCGTCTCCATGTGGATGTCGAGTTTGCAACCGCAGAAGCAGCAGAAAAGGCTCTTGCGTTGGATTACACAAGATTGACGAACCATCCCATCAAAGTTGGTATGGCTCCAGAAGAGGGTGAATGTTTCCCCAATAGAAGCGTGAGCATTCCATTCTCGAAGTGCGAAACTTTGCAGCCTCTAACTGTATTTGTGATCGGATTTGATACTTCCCTTCCCGAAGAAAAGATAAAAGCTAGCCTGAAGAATCATTTCAGTCCTTGTGGAGAGATTACGAGGATCTCATTACCGAGATTTCATGATTCTTGTAATATTAAGGGGTTTGCTCATTTGGACTTCAAGGATATTGAAGGCTATAAGAAGGCACTACTACTTGATCAAACTGCATTTGGAGAATTTTGGTTGTCAGTTGAAAAAGCAAAACCAAAGCAAAGACGTGATAATCATCAGGGTATAGGTGGTAGCAGAGATGGTTATCACGGTGGTGGAAGGGATGGCAGAGACTATGGGGGTGGGTCGGGTTGGGGGAGAAGTCATGGTGCTGGGAGACACTATTAG 1893 0.4194 MVNQSESKVCDNAIPPPKIEIKRGHEDEDQNEVVAKKQKIDEVVVNQEVKEENNSDYSEHDKKLQAKNESDAGCGSLKSSDDGVSDPDSHGSSDEDKPEDLESHENNEEEIEGKVSKTAQERHDTPVSLNEKYAAPKTIFVKNLSYSVERPDMEDIFKDCGEVVGVRFNTDSEGRFKGHGYVEFGTAEAAKKALELNNTELLYRRIKIEIAREKGEYPPYRSSFHTGGDLQSHTVNVKGFDASLVESKPKSPATTNETNGASKTIYVRNLSYIVERADMEEIFKDCGEIVDVRLHTDRDGNFKGHGHVQFATAEAAQKALAFNKKVYFNRLMFVGLALERGKYASNGSSWSWSNSLHKDEKLQSQTVPVKCSDTSLADGKLSCAKEVKDVEMFDAASAEKKIPETSATRKEENAASKTVCVRNLSFDVERAEIENIFKDCGEVADVRLHVDVEFATAEAAEKALALDYTRLTNHPIKVGMAPEEGECFPNRSVSIPFSKCETLQPLTVFVIGFDTSLPEEKIKASLKNHFSPCGEITRISLPRFHDSCNIKGFAHLDFKDIEGYKKALLLDQTAFGEFWLSVEKAKPKQRRDNHQGIGGSRDGYHGGGRDGRDYGGGSGWGRSHGAGRHY 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03771 630 Coils Coil 101 121 - -
Vifa3g03771 630 SUPERFAMILY RNA-binding domain, RBD 410 490 IPR035979 GO:0003676
Vifa3g03771 630 Gene3D - 235 347 IPR012677 -
Vifa3g03771 630 Gene3D - 359 486 IPR012677 -
Vifa3g03771 630 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 137 213 IPR000504 GO:0003723
Vifa3g03771 630 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 359 547 - -
Vifa3g03771 630 SMART rrm1_1 418 479 IPR000504 GO:0003723
Vifa3g03771 630 SMART rrm1_1 264 335 IPR000504 GO:0003723
Vifa3g03771 630 SMART rrm1_1 138 209 IPR000504 GO:0003723
Vifa3g03771 630 SMART rrm1_1 507 583 IPR000504 GO:0003723
Vifa3g03771 630 MobiDBLite consensus disorder prediction 83 100 - -
Vifa3g03771 630 MobiDBLite consensus disorder prediction 107 128 - -
Vifa3g03771 630 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 419 477 IPR000504 GO:0003723
Vifa3g03771 630 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 139 207 IPR000504 GO:0003723
Vifa3g03771 630 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 516 575 IPR000504 GO:0003723
Vifa3g03771 630 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 265 330 IPR000504 GO:0003723
Vifa3g03771 630 MobiDBLite consensus disorder prediction 1 129 - -
Vifa3g03771 630 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 417 483 IPR000504 GO:0003723
Vifa3g03771 630 MobiDBLite consensus disorder prediction 18 68 - -
Vifa3g03771 630 SUPERFAMILY RNA-binding domain, RBD 505 619 IPR035979 GO:0003676
Vifa3g03771 630 SUPERFAMILY RNA-binding domain, RBD 255 348 IPR035979 GO:0003676
Vifa3g03771 630 Gene3D - 99 234 IPR012677 -
Vifa3g03771 630 Gene3D - 499 625 IPR012677 -
Vifa3g03771 630 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 506 587 IPR000504 GO:0003723
Vifa3g03771 630 MobiDBLite consensus disorder prediction 589 630 - -
Vifa3g03771 630 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 263 339 IPR000504 GO:0003723
Vifa3g03771 630 SUPERFAMILY RNA-binding domain, RBD 129 228 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03771 Vifa-Chr3 1104867405 1104891794 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03771 138 481 Eukaryotic Initiation Factors Gene Family AT4G34110 23.058 1.80e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03771 - - tpra:123897326 859.366