Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03758 ATGGCTTCTTCCATCAAAATCTCTAGGCTCATTTCTCGCTCAATTTCTTCTGCATCTTCTTCTACCTTGTTCTCTCGAGGTGGGAATGGTGGTTATCGGGGTGTATTACTTGCTAAATATAGCACAGCTGCTGTTGTTGATGAACAGCCGATTAAACCGTTGGTGCAAGTAGAGCATACTGGGCTCTTAATTGATGGAAAGTTTGTTGATGCTGCTTCTGGGAAAACATTTCCAACATTGGATCCGAGGACCGGGGAAGTGATTGCTCATGTTGCGGAGGGTCACTCTGAAGATATTGATAGGGCTGTTGCAGCTGCACGCAAAGCATTTGATATAGGCCCGTGGCCTAAGATGACAGCCTATGAAAGGCAAAAGATAATGTTGCGTGCTACTGATCTGATTGAGAAACATAACGATGAGATTGCGACACTTGAGACATGGGATAATGGGAAGCCGTATGAACAATCTCGTCAAGTTGAAATTCCAATGTTGGTTCGCCTAATTCGATACTATGCTGGTTGGGCAGATAAGATTCATGGTCTCACAGTTCCAGCTGACGGAGCCTATCATGTGCAGACATTGCATGAACCGATTGGTGTTGCTGGTCAGATCATTCCATGGAACTTCCCTCTTCTCATGTTTGCTTGGAAGGTCGGTCCGGCGTTAGCATGTGGCAACACTGTCGTTATGAAAACAGCCGAGCAGACACCACTGTCCGCGTTGTATACATCAAGACTATTTCTTGAGGCTGGACTTCCTCCTGACGTGTTGAATATAGTGTCCGGCTTCGGTCCAACGACAGGTGCTGCTCTTGCTAGTCACGCGGATGTTGAGAAGGTTGCATTCACTGGTTCAACTGCAACCGGCAAAGTTATTCTTCAACTTGCAGCTCAAAGCAATCTTAAACAAGTAACTTTGGAGCTTGGCGGGCAATCTCCGTTTATTGTATGCGAAGATGCTGATGTAGATCAGGCTGTTGAGCTAGCACACTTTGCCCTATTCTTCAATCAAGGACAATGTTGCTGTGCTGGGTCTCGTACATTTATACATGAACGTGTGTATGACGAGTTTTTCGAGAAAGCTAAGATCCGCGCTTTGAACCGTTCTGTTGGAGATCCATTCAAGTCAGGAATAGAACAAGGTCCTCAGATTGATTCAAATCAATTTGAGAAAATATTGAGATATATTAGATCTGGTGTCGACACTGGGGCTACTCTTGAAACTGGCGGAGAAAGGCATGGCAACAAGGGCTACTATATTCAGCCTACTGTTTTCTCAAACGTTCAGGATGACATGCCGATCGCAAAAGAAGAGATATTTGGTCGAGTACAAACCATATTAAAATTCAAGAACAATGAAGATGTAATTCAAAGAGCAAACAATTCGAAGTATGGTCTTGCAACAGGGATCTTCACACAAAACATAGACACTGCTAATACTTTGACAAGAGCATTGAAAGTTGGGACAGTTTGGGTGAATTGTTATGATGTATTTGATGCTACAATTCCTTTTGATAAAGTGGAAGCCCCAGAGGAGACTTGGGTTGCTTTAAATATTGATGGTGCAGTTTCTGGCGCAGGGACTGCTAGCATTGGTGGTTTGATAAGAAATCATGATGGACATTGGATTGTTGGTTACTCTAATTATCTTGGAAGATGCAACCCTCTCACAGCTGAAATGTGGAGTGTGTGGGAAGGTATTGGGGTGGCTAGAGACAATGGTTTCCAAAAATTCAAGATCCAAACTAACAGTAGTGATGTTTATAAATTGTTAACTGGACATGTGCTGCTCAATCATCCTCAGACAGTTCTGACCCAAAACATTAGAGATGCAATGAAGAGTTTTAAGGAGGACATTTGCAAGAAGATTTATCGTGAAGCGAATGTGTGTGTGGGTGACTTGGCTTGGAAAGTCTTTCAAAAGGCAAAAGTCTTTACCTTCTTCCACATCAATTTCAGAATATAA 1965 0.4305 MASSIKISRLISRSISSASSSTLFSRGGNGGYRGVLLAKYSTAAVVDEQPIKPLVQVEHTGLLIDGKFVDAASGKTFPTLDPRTGEVIAHVAEGHSEDIDRAVAAARKAFDIGPWPKMTAYERQKIMLRATDLIEKHNDEIATLETWDNGKPYEQSRQVEIPMLVRLIRYYAGWADKIHGLTVPADGAYHVQTLHEPIGVAGQIIPWNFPLLMFAWKVGPALACGNTVVMKTAEQTPLSALYTSRLFLEAGLPPDVLNIVSGFGPTTGAALASHADVEKVAFTGSTATGKVILQLAAQSNLKQVTLELGGQSPFIVCEDADVDQAVELAHFALFFNQGQCCCAGSRTFIHERVYDEFFEKAKIRALNRSVGDPFKSGIEQGPQIDSNQFEKILRYIRSGVDTGATLETGGERHGNKGYYIQPTVFSNVQDDMPIAKEEIFGRVQTILKFKNNEDVIQRANNSKYGLATGIFTQNIDTANTLTRALKVGTVWVNCYDVFDATIPFDKVEAPEETWVALNIDGAVSGAGTASIGGLIRNHDGHWIVGYSNYLGRCNPLTAEMWSVWEGIGVARDNGFQKFKIQTNSSDVYKLLTGHVLLNHPQTVLTQNIRDAMKSFKEDICKKIYREANVCVGDLAWKVFQKAKVFTFFHINFRI 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03758 654 Pfam Aldehyde dehydrogenase family 68 504 IPR015590 GO:0016491
Vifa3g03758 654 FunFam ALD5p Mitochondrial aldehyde dehydrogenase 64 331 - -
Vifa3g03758 654 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 47 504 - -
Vifa3g03758 654 Gene3D - 514 640 IPR036397 GO:0003676
Vifa3g03758 654 SUPERFAMILY Ribonuclease H-like 513 636 IPR012337 -
Vifa3g03758 654 CDD RNase_H_like 517 630 IPR044730 -
Vifa3g03758 654 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 334 345 IPR016160 GO:0016491
Vifa3g03758 654 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 312 501 IPR016163 GO:0016620
Vifa3g03758 654 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 74 504 IPR016162 GO:0016491
Vifa3g03758 654 FunFam Mitochondrial aldehyde dehydrogenase 2 312 501 - -
Vifa3g03758 654 Pfam Reverse transcriptase-like 518 635 IPR002156 GO:0003676|GO:0004523
Vifa3g03758 654 SUPERFAMILY ALDH-like 55 504 IPR016161 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03758 Vifa-Chr3 1101028915 1101031213 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03758 6 504 Aldehyde Dehydrogenase Gene Family AT3G48000 73.146 0.0 783
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03758 K00128 - gmx:100786773 824.698