Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03755 ATGGCTGCTCAACTCACTTATTTTGTCGGATCTCATGTTTGGGTTGAGGACCCTGATCAAGCTTGGTTAGATGGCGAAATCCTTGAATCTAAAGATAATGAAATCACCGTTAGCTTTGAATCAGGAACAAAGGTTGTGAGCAAATCAGCTAATATTTACCCGAAAGATCCTGAGTTTCCACCTAACGGCGTAGAAGATATGACAAGACTTGCATATCTGCACGAACCGGGAGTACTTCAAAATTTGCAAATTCGTTATACCCTGAATGATATATATACATACACGGGAAACATATTGATAGCAGTGAACCCTTTTCAAAGGTTACCTCATTTGTATGCAACTAGTACAATGGCAAAGTATAAAGGCGCGTCTTTTGGTGAGCAGAGTCCACATCCTTTTGCAATTGCAGGTTATGCATATAGGAAAATGATAAATGAAGAAAAAAGCCAAGCAATTTTGGTTAGTGGAGAAAGTGGAGCTGGTAAAACCGAAAGTACAAAGATGCTTATGCATTATCTTGCCTATTTGGGAGGGAGAGCGGCAACTGAGGGACGGTCTGTGGAGCAACAAGTTCTCGAGTCCAATCCTGTTTTAGAAGCATTCGGGAATGCAAAGACGCTTAGGAATAATAATTCAAGTCGTTTTGGTAAGTTTGTGGAGATTCAGTTTGATCAAAAGGGGAGAATTTCAGGAGCTGCTATCAGAACTTATTTGCTAGAACGATCACGTGTTTGTCAAGTTTCTGATCCCGAGAGAAATTATCATTGCTTTTATATGCTTTGTGCTGCACCAAAAGAGGATGTTGAACGGTTCAAATTGGGAAATCCAAGAACCTTTCATTATCTTAATCAATCAAATTGCTATGAACTGGATGCATTGGATGATTCAAAGGAGTATCTTGCAACAAGGAGAGCCATGGAAGTTGTTGGAATCAGCGCTGATGAAACCGATGCTATATTTCGAATAGTAGCTGCTGTACTTCATTTAGGAAACATTGAATTTGTCAAGGCAGTGGATGAAGGAATGGATTCCTCTAAACCAAAAGACGAAAAATCTTATTTCCATCTAAAAACAGCGGCTGAACTTTTGATGTGCGATGTAAAGTCCCTTGAAGACTCTTTTTGCAAACGCCTTATGGTGACTCGTGGCGAGGCTATAACAAAATGCCTTGATCCAAACTCTGCAGCTCTCAGTAGAGATGCATTGGCTAAAATAGTTTATTCAAGGCTTTTTGACTGGATTGTGGACAAGATTAACAACTCTATTGGACAAGATCCAACTTCAAAGAACTTAATTGGAGTTCTAGATATATACGGATTCGAGAGTTTCAAGACAAACAGCTTCGAGCAATTTTGTATCAATTTGACAAATGAGAAGTTACAGCAACATTTCAACCAGCATGTCTTCAAAATGGAGCAAGAGGAATATACAAAGGAAGAAATCGATTGGAGTTATATAGAGTTCGTTGATAATCAAGATGTTCTTGATCTTATCGAGAAGAAACCTGGTGGTGTTATTGCTCTTCTGGATGAGGCCTGTATGTTTCCAAGATCAACGCACGAAACATTTGCTGAAAAGCTATATCAAACACTTAGGGACAATAAGCGATTCAGCAAACCGAAATTGTCACGAACTGACTTCACCATCAATCACTATGCTGGTGATGTCACTTATCAAACTGATCTTTTCCTTGATAAAAACAAAGACTACGTTGTTCCGGAACACGCTGCGCTGCTCAGTGCTTCCAAGTGCTCCTTTGTTTCAGGACTTTTCCCACCTTTACATGAGGAATCTACTAAATCAACCAAGTTTTCTTCTATAGCCACTCAGTTTAAGCAACAACTGCAATCTTTGCTTGAAACATTGAATGCGACTGAGCCACACTACATTCGTTGCGTAAAGCCAAATAATCTTCTTAAGCCGGGGATATTTGAGAACAACGATGTGCTACAGCAGCTTCGATGTGGGGGAGTAATGGAGGCAATTAGGATAAGTTGTGCTGGATATCCAACTCGAAAGAACTTTGATGAATTTGTTCAGCGGTTTAGTATCTTGGAACCTAAGGTTCTAAAATCATGCCCTGATGAGATGACTGCTTGCAAGAGGCTTCTCGGTAAAGCAAACCTTAAAGATTATCAGATAGGAAAGACAAAAGTTTTTCTGAGAGCAGGTCAAATGGCAGAACTAGATGCATGTCGTGCCGAGGTCCTAGGAAGATCCGCAATCATTATTCAGAAAAAAGGTCGCACATATATTTGTCAGAAACAGTACAATTTATTGCGATTCTCTGCCATAGAACTGCAAAGGGCTATTAGAGGACAACTTGCAAGACGTCAGTATGAATGCTTGAGAAGGGATGCCGCATCTTTGATAATCCAGAAACAAATCCGCATGTATCTTTCGAGAAGTGCTTATAAAACTAAATACTCCAAAGCAGTTTGTATTCAAACCGGCATGCGAGGAATGGCAGCTAGAAATGAACTTCGATTCAGGAAGCGGACACACGCTGCAACTGTTATTCAGGGTTACTACAGATGTTATTTAGCTTGTAATTATTTCAAAAGGCTAAAGAAAGCAACAATTGCAGTGCAATGCTCCTGGAGGAGAACAAATGCACGAAGAGAACTTCGAAAGCTTAAAATGGCTGCTAAGGAATCTAAGGCCCTAGAAGCCGCGAAAATTCATCTAGAAAAGCAAGTTGAGGAACTATCTGAGTGTCTAGAGACAGAAAAGAGAATGAGGGAAGCCAAGACACAGGAAAATGAAAAATTACAATGTGCTTTGGAAGAGATGGAGCTTCAGTTCAAAGAAACTAAAGCGGAGCTCATTCAGGAACGCGAGGCTGCAAAGAAATTGGCTGAGCAAATTCCAACTATACAGGAAAAAAGCGTTGCTGATAATGAATTGATCGATAAGCTTACTGCAGAAAATGAACAACTCAAGGAGCTTGTTAACTCATTGGAAAAGAAAACTAAACAGGAGCTTTCTGATAATGTTACCCACAATGAACTGGTTAATAAGCTTACTACAGAAAATGAACAACTCAAGGAGCTAGTTAGTTCATTGGAAAAGAAAACTGAACATGAGTTTCCTGCTAGTTTTACCGATAATGAAGTGATTAATAAGCTTACTACGGAAAATGAACAGCTCAAAGAGCTAGTTAATTCATTGGAAAAGAAAACTAAAGAGGAGTTTCCTGCTAATTTTACTGAAAATGAAGTGATTAGTAAGCTTACTACAGAAAATGAACAGCTCAATGAGCTGGTTAGTTCATTGGACAAGAAAACTGAACATGAGTTTCCTGCTAATTTTACGGAAAATGAAGTGATTAATAAGCTTACTACAGAAAATGAACAGCTCAAAAAGCTGGTTAGTTCATTGGAAAAGAAAACTGAACATGAGTTTCCTGCTAATTTTACGGAAAATGAAGTGATTAATAAGCTTACTACAGAAAATGAACAGCTCAAAGAGCTGGTTAGTTCATTAGAAAAGAAAACTAAAGAGGAGTTTCCTGCTAGTTTTACCGATAATGAAGTGATTAATAAGCTTACTACAGAAAATGAACAGCTCAAAGAGCTGGTTAGTTCATTGGAAAAGAAAACTAAAGAGGAGTTTCCTGCTAGTTTTACCGACAATGAAGTGATTAATAAGCTTAGAGAAGAAAAGGAACATTTTAAGGATCAGGTTAGTTCATTGGAAAGGAAAATTGATGAGACAGAAAAGAAATACGAAGAAAGCAGCACGATTAGCGAGGAGCGGATGAATCAAATTATAGAAACGGAATCAAAGATGATTGAGATAAAGACGAATATGCAAAGGCTTGAAGAAAAGCTTTCTGATATGGAAACCGAGAATCAAATTTTTCGGAAGCAAGCGCTGTTGACCTCATCATCCAAGAGAATGACAGACAAGTTAACACCTGCTGCAATTCCGCCCTTGGAAAATGGTCATCAGATGTCAGTGAAAACACTTGGTTCAGAAGCTGTGAGGAGATCGCATATGGAGAGGCATCAAGAGAGTGTAGATGCTCTTTTCAAGTGTGTGATAAAAGATCTCGGGTTCTCTGAAGGGAAACCTGTCGCAGCATTTACCCTTTATAATTGTTTGCTACATTGGAAATCTTTTGAAGCAGATAAGACAAGTATATTTGATCGTCTTATTCAGCTGATCGGTTCTGCAATAGAGGATCAGGACAATAACAATTGTATGGCTTATTGGCTGTCCAATACATCGGCTTTGTTTTTTCACCTTCAACGATGTTTAAGAGCACCGGCGCGAAAACCTCCCACTCCAACAGGGTTTTTTGGGAGGATGACTCAGGGTTTCCGCTCGTCAAATAGTCTTTCGAGCGGTTCGTTTGATGTAGAACATCAAGTTGAAGCAAAGTATCCGGCTTTGCTTTTCAAGCAACAGCTTGCAGCTTATGTGGAAAAGATATATGGAATCGTTCGAGAAAATATGAAGAAAGAATTGTCCCCTCTACTTTCTACTTGCATAGAGGAGCACAGAACACGAAAAGACAACAGCCAAACAGCTGGTTCATGGCTCAACATTATTGAATGTCTTAATAAATTTCTCAAGATTCTAAAAGAAAATTATGTGCCTCCCATTCTAATTCAAAAGGTATTTAATCAGACGTTTCAATATATCAACGCCGAAATATTTAACAGCCTTCTATTGCATAAAGAATGCTGCACATTCGACAACGAGGAATATATAAAATCAGGGTTAGCTGAACTAGAATTATGGTGCATTGAAGTAACCGAAGAGTATGCTGGCTCATCTTTGGATGAACTCAACCATTCGAAACAAGCAGTTAGATTCTTGGTTGCTCAAGAGAAGGATGAAATATCCTATGATGATCTCACAAATGACATCTGCCCTGTCTTGAGTTCTCAACAGCTTTATAGACTATGTACACTAAACTCGGATGAAAATGAAAATGAGAACACGAAAAGTGTATCAACAGATGTAACTACTAGATTAAAGCTGCTAATGACAGATGATGTAGGTGATGATGACAAATCCTTCTTGTTGGAAGACAATTCAAGTCTTCCTATTATTGTTGAAGAGGTTTCTCATTCTCAAAAAGACAAGACAATTCCGAAAGTAAATCCTCCTGCAGAATTACTCGAGAGTCCGGCCTTCCAATTTTTGCATGATTATTCTTGA 5172 0.3879 MAAQLTYFVGSHVWVEDPDQAWLDGEILESKDNEITVSFESGTKVVSKSANIYPKDPEFPPNGVEDMTRLAYLHEPGVLQNLQIRYTLNDIYTYTGNILIAVNPFQRLPHLYATSTMAKYKGASFGEQSPHPFAIAGYAYRKMINEEKSQAILVSGESGAGKTESTKMLMHYLAYLGGRAATEGRSVEQQVLESNPVLEAFGNAKTLRNNNSSRFGKFVEIQFDQKGRISGAAIRTYLLERSRVCQVSDPERNYHCFYMLCAAPKEDVERFKLGNPRTFHYLNQSNCYELDALDDSKEYLATRRAMEVVGISADETDAIFRIVAAVLHLGNIEFVKAVDEGMDSSKPKDEKSYFHLKTAAELLMCDVKSLEDSFCKRLMVTRGEAITKCLDPNSAALSRDALAKIVYSRLFDWIVDKINNSIGQDPTSKNLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGVIALLDEACMFPRSTHETFAEKLYQTLRDNKRFSKPKLSRTDFTINHYAGDVTYQTDLFLDKNKDYVVPEHAALLSASKCSFVSGLFPPLHEESTKSTKFSSIATQFKQQLQSLLETLNATEPHYIRCVKPNNLLKPGIFENNDVLQQLRCGGVMEAIRISCAGYPTRKNFDEFVQRFSILEPKVLKSCPDEMTACKRLLGKANLKDYQIGKTKVFLRAGQMAELDACRAEVLGRSAIIIQKKGRTYICQKQYNLLRFSAIELQRAIRGQLARRQYECLRRDAASLIIQKQIRMYLSRSAYKTKYSKAVCIQTGMRGMAARNELRFRKRTHAATVIQGYYRCYLACNYFKRLKKATIAVQCSWRRTNARRELRKLKMAAKESKALEAAKIHLEKQVEELSECLETEKRMREAKTQENEKLQCALEEMELQFKETKAELIQEREAAKKLAEQIPTIQEKSVADNELIDKLTAENEQLKELVNSLEKKTKQELSDNVTHNELVNKLTTENEQLKELVSSLEKKTEHEFPASFTDNEVINKLTTENEQLKELVNSLEKKTKEEFPANFTENEVISKLTTENEQLNELVSSLDKKTEHEFPANFTENEVINKLTTENEQLKKLVSSLEKKTEHEFPANFTENEVINKLTTENEQLKELVSSLEKKTKEEFPASFTDNEVINKLTTENEQLKELVSSLEKKTKEEFPASFTDNEVINKLREEKEHFKDQVSSLERKIDETEKKYEESSTISEERMNQIIETESKMIEIKTNMQRLEEKLSDMETENQIFRKQALLTSSSKRMTDKLTPAAIPPLENGHQMSVKTLGSEAVRRSHMERHQESVDALFKCVIKDLGFSEGKPVAAFTLYNCLLHWKSFEADKTSIFDRLIQLIGSAIEDQDNNNCMAYWLSNTSALFFHLQRCLRAPARKPPTPTGFFGRMTQGFRSSNSLSSGSFDVEHQVEAKYPALLFKQQLAAYVEKIYGIVRENMKKELSPLLSTCIEEHRTRKDNSQTAGSWLNIIECLNKFLKILKENYVPPILIQKVFNQTFQYINAEIFNSLLLHKECCTFDNEEYIKSGLAELELWCIEVTEEYAGSSLDELNHSKQAVRFLVAQEKDEISYDDLTNDICPVLSSQQLYRLCTLNSDENENENTKSVSTDVTTRLKLLMTDDVGDDDKSFLLEDNSSLPIIVEEVSHSQKDKTIPKVNPPAELLESPAFQFLHDYS 1723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03755 1723 Coils Coil 1180 1203 - -
Vifa3g03755 1723 Gene3D - 441 625 - -
Vifa3g03755 1723 Coils Coil 1075 1095 - -
Vifa3g03755 1723 Gene3D - 252 310 - -
Vifa3g03755 1723 Pfam Myosin head (motor domain) 64 722 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g03755 1723 Coils Coil 1257 1291 - -
Vifa3g03755 1723 FunFam unconventional myosin-Va 787 835 - -
Vifa3g03755 1723 Coils Coil 1110 1130 - -
Vifa3g03755 1723 FunFam Class V myosin 441 582 - -
Vifa3g03755 1723 Gene3D Myosin VI head, motor domain, U50 subdomain 312 603 - -
Vifa3g03755 1723 PRINTS Myosin heavy chain signature 431 459 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g03755 1723 PRINTS Myosin heavy chain signature 196 223 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g03755 1723 PRINTS Myosin heavy chain signature 484 512 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g03755 1723 PRINTS Myosin heavy chain signature 149 174 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g03755 1723 PRINTS Myosin heavy chain signature 92 111 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g03755 1723 ProSiteProfiles Dilute domain profile. 1384 1668 IPR002710 -
Vifa3g03755 1723 FunFam Myosin 2 312 432 - -
Vifa3g03755 1723 Coils Coil 1215 1249 - -
Vifa3g03755 1723 FunFam Myosin heavy chain 252 307 - -
Vifa3g03755 1723 Gene3D - 669 732 - -
Vifa3g03755 1723 FunFam unconventional myosin-Va 836 883 - -
Vifa3g03755 1723 Coils Coil 907 955 - -
Vifa3g03755 1723 ProSiteProfiles IQ motif profile. 856 885 IPR000048 GO:0005515
Vifa3g03755 1723 CDD MYSc_Myo11 76 722 IPR036018 -
Vifa3g03755 1723 ProSiteProfiles IQ motif profile. 760 789 IPR000048 GO:0005515
Vifa3g03755 1723 Pfam Myosin N-terminal SH3-like domain 10 50 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vifa3g03755 1723 Coils Coil 869 899 - -
Vifa3g03755 1723 SMART DIL_2 1541 1648 IPR002710 -
Vifa3g03755 1723 Gene3D Kinesin motor domain 65 664 IPR036961 -
Vifa3g03755 1723 ProSiteProfiles IQ motif profile. 833 862 IPR000048 GO:0005515
Vifa3g03755 1723 Coils Coil 1040 1063 - -
Vifa3g03755 1723 PANTHER MYOSIN 1206 1649 - -
Vifa3g03755 1723 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 787 IPR027417 -
Vifa3g03755 1723 Gene3D - 737 786 - -
Vifa3g03755 1723 Gene3D - 787 834 - -
Vifa3g03755 1723 Gene3D - 835 884 - -
Vifa3g03755 1723 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 788 884 IPR027417 -
Vifa3g03755 1723 CDD MyosinXI_CBD 1335 1690 IPR037975 GO:0007015
Vifa3g03755 1723 ProSiteProfiles IQ motif profile. 808 837 IPR000048 GO:0005515
Vifa3g03755 1723 ProSiteProfiles IQ motif profile. 785 811 IPR000048 GO:0005515
Vifa3g03755 1723 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 8 57 IPR004009 GO:0003774|GO:0005524|GO:0016459
Vifa3g03755 1723 SMART MYSc_2a 56 735 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g03755 1723 Pfam DIL domain 1542 1640 IPR002710 -
Vifa3g03755 1723 ProSiteProfiles Myosin motor domain profile. 62 734 IPR001609 GO:0003774|GO:0005524|GO:0016459
Vifa3g03755 1723 Pfam IQ calmodulin-binding motif 788 806 IPR000048 GO:0005515
Vifa3g03755 1723 Pfam IQ calmodulin-binding motif 763 780 IPR000048 GO:0005515
Vifa3g03755 1723 Coils Coil 970 1025 - -
Vifa3g03755 1723 Coils Coil 1145 1168 - -
Vifa3g03755 1723 SMART iq_5 855 877 IPR000048 GO:0005515
Vifa3g03755 1723 SMART iq_5 736 758 IPR000048 GO:0005515
Vifa3g03755 1723 SMART iq_5 784 806 IPR000048 GO:0005515
Vifa3g03755 1723 SMART iq_5 832 854 IPR000048 GO:0005515
Vifa3g03755 1723 SMART iq_5 759 781 IPR000048 GO:0005515
Vifa3g03755 1723 SMART iq_5 807 829 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03755 Vifa-Chr3 1099778523 1099788710 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03755 1512 1721 Myosins gene family AT1G04600 48.571 1.26e-53 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03755 K10357 - gmx:100791031 2442.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03755 3 1099778523 1099788710 Vifa3g03755 3 1099778523 1099788710 ECH