Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03746 ATGGGTGAAACAAATGCTATCAAATACAACAGAAGCAAAGTTAGAAGAAGAAGAAGAATGGTAGAAAAATCTTTGGTTACTCGAAAGTTAAGTAAACTTGATTTCGATGAGATGAATTGGACAAACATGATTCCGGAATGTCCAATATATCATCCATCAGAACAAGAATTTCAGAATCCTTTAGTTTATCTTCAGAAAATTGCTCCTGAGGCTTCTAAATATGGTATATGCAAAATTGTTTCACCAGTTACTGCTTCTAATTCGGCTGATTTCGTCATAACGAAAGAGAAAAAGGACTTCAAGTTTGAAACGATTGTGCAGCCTCTTCGTCTTTCGAAATGGAATGAGAAGGATATGATAACTTTTTCTAAGAGAGGAAGAAAATATACGTATCGTGAATTCGAGGCGTTGGCAAACAAGGCCTTTTCGAATAGATTTGGAAGTTTCGAAGATCTTTCTTCTTCGAGTATCGAAAAAGCGTTCTGGCACGAAATGATACATGGAGAGAAAGGAACTGTTGAGTATGGTGTTAACATTGAGGGTAGTGTCTTTTCATGTGATCCTGATGATAGGCTTGGAACAAGCAAATTCAATTTGAAGAAATTGGCGCGGCTACCACAATCACCGTTGCGTTTGGTTGACAAAGGAATTCCAGGAGTGACTGATCCCATGCTCTACATTGGAATGCTGTTCAGTATGTTTGCATGGCATGTAGAAGATCACTATTTGTATAGTATAAATTATCATCATTCTGGTGGAAACAAAACTTGGTATGGTGTTCCTAGTTATGCAGCCTCTGAATTTGAAAAGACTGTCTTGAACCATGTGTATTGCAACAAAGTGTTGACAGAACATGGAGAGAATGGTGCATTTCAATTTATAGCGCATAAAACAACGATGTTCCCTCCGAATGTCCTGTTGCAAAACGATGTTCCGGTTTATAAGGCTCTGCAGAAGCCGGGAGAGTTTGTCGTCACCTTTCCTAAATCATATCATGCTGGATTTAGCCACGGTTTTAATTGTGGAGAAGCTGTAAACTTTGCTATTGGTGATTGGTTTCCACTTGGGGCTGTGGCTAGCAAACGTTATGCACATCTCAAAATGCTACCAATAATTCCATATGAAGAACTTCTTTGTAAAGAGGCCATGCTTATCTACAAGTCCTCAAAATTCAGAAGTTCCAAGAGAAAGCTTGAAGCCACTTTGTCCTATCGGGCTATTGTACCGTCTTTCTTGCATCTTATGCAATTTTACAAGACTTTACTATCGCGGTTGAACAGTTCAAGAAACGTGTCGAGCTCTTCAAATACATTATTAGCCTCTCTGACATGCAGCATTTGCCAGAGGGATTGTTATGTAGCTTACTTGTTGTGCAAGAAATGCTATTCCTATCCAATTTGCCTTTTCCACGATGTTGTGCCACAAACTTGCTTGTGTGGGAGAAAATATTCTGTTTATAAGAGGAATGACATGTTGGAATTGGAACGTGCTGCCAAAAGTTTTCAACAGGAAAAAGAATGCATCGACGCGCTATCTTTAACAAGTATATTCTCCTACAACATAAATGAATACACCAAAGATCTCAAGAATAATAACTGGCATGAAGAAAAAAGTCCTAGAAGAGGTGTTAACTCTCTAGGGGCAGTATCGAAACGAAAAAAACGAGTTGCAGATAACATCAAACACAAAGTCGAAAAGAAGACAAAGATTCGGCATAGAAACAATGCGCCTCCATCAGGGATGAGTACTAAAAGACCACGGATCCTTTATTAA 1773 0.3869 MGETNAIKYNRSKVRRRRRMVEKSLVTRKLSKLDFDEMNWTNMIPECPIYHPSEQEFQNPLVYLQKIAPEASKYGICKIVSPVTASNSADFVITKEKKDFKFETIVQPLRLSKWNEKDMITFSKRGRKYTYREFEALANKAFSNRFGSFEDLSSSSIEKAFWHEMIHGEKGTVEYGVNIEGSVFSCDPDDRLGTSKFNLKKLARLPQSPLRLVDKGIPGVTDPMLYIGMLFSMFAWHVEDHYLYSINYHHSGGNKTWYGVPSYAASEFEKTVLNHVYCNKVLTEHGENGAFQFIAHKTTMFPPNVLLQNDVPVYKALQKPGEFVVTFPKSYHAGFSHGFNCGEAVNFAIGDWFPLGAVASKRYAHLKMLPIIPYEELLCKEAMLIYKSSKFRSSKRKLEATLSYRAIVPSFLHLMQFYKTLLSRLNSSRNVSSSSNTLLASLTCSICQRDCYVAYLLCKKCYSYPICLFHDVVPQTCLCGRKYSVYKRNDMLELERAAKSFQQEKECIDALSLTSIFSYNINEYTKDLKNNNWHEEKSPRRGVNSLGAVSKRKKRVADNIKHKVEKKTKIRHRNNAPPSGMSTKRPRILY 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03746 590 ProSiteProfiles JmjN domain profile. 47 88 IPR003349 -
Vifa3g03746 590 Pfam jmjN domain 48 80 IPR003349 -
Vifa3g03746 590 SMART cupin_9 194 364 IPR003347 -
Vifa3g03746 590 Pfam JmjC domain, hydroxylase 224 347 IPR003347 -
Vifa3g03746 590 ProSiteProfiles JmjC domain profile. 194 364 IPR003347 -
Vifa3g03746 590 SUPERFAMILY Clavaminate synthase-like 126 383 - -
Vifa3g03746 590 MobiDBLite consensus disorder prediction 565 590 - -
Vifa3g03746 590 Gene3D Cupin 47 408 - -
Vifa3g03746 590 PANTHER LYSINE-SPECIFIC DEMETHYLASE 40 557 - -
Vifa3g03746 590 SMART JmjN_1 46 87 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03746 Vifa-Chr3 1097451948 1097454884 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03746 44 510 JUMONJI Transcription Factor Family AT2G34880 29.444 1.65e-54 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vifa3g03746 JmjC 3.9e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03746 - - cam:101502558 937.947