Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03738 ATGTCTAACTCCAAGGAAACATCTAACGCCGTCACAATAACAGACCCAGAATCCACAAACCAACCCGCCGTTAAAAAACCACCGTCAAAAGACCGTCACAGCAAAGTCGACGGACGCGGCAGAAGAATACGCATGCCGATAATATGCGCCGCACGTGTCTTCCAGTTAACACGTGAGCTCGGTCATAAATCCGACGGTCAAACCATCGAGTGGCTCCTCCGTCAAGCCGAGCCCTCCATCATCGCCGCCACCGGCACCGGAACTACTCCCGCTTCTTTCTCTTCTCTCTCCGAGCATAAACCGTTTCTCTCTCCTTCTCCGTTCATTCTCGGGAAACGGTTACGTTCGGAACACGATGATACCGTTTCTGTTTCGATTGCGGCGCCTACTGCTCCTCCTGCTTTGTGGAGGCCGGATTTCGCTCAGCTTTGGAGTTTTGCGGCTGCGGCTCAACCGCAGCAGGATGTTCTTTCGATTTCTCCGAATCAGCATCATCAGCATAGTTCGCTTTTTCATCATCAGCAGCAACAGCAACAACAGCAGCATCAACAACAACAAGGTTCTATGGGAGAAGCTTCCGCGGCGAGGCTAGGGAATTACCTTCCCGGTCATCTGAATTTGCTGGCTTCACTGTCAGGTGGTAATGGAAACTCTGGCCGCGGAGACGACGAGGATCGTTGA 681 0.5242 MSNSKETSNAVTITDPESTNQPAVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFSSLSEHKPFLSPSPFILGKRLRSEHDDTVSVSIAAPTAPPALWRPDFAQLWSFAAAAQPQQDVLSISPNQHHQHSSLFHHQQQQQQQQHQQQQGSMGEASAARLGNYLPGHLNLLASLSGGNGNSGRGDDEDR 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03738 226 Pfam TCP family transcription factor 29 186 IPR017887 -
Vifa3g03738 226 MobiDBLite consensus disorder prediction 162 192 - -
Vifa3g03738 226 ProSiteProfiles TCP domain profile. 29 83 IPR017887 -
Vifa3g03738 226 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 17 192 IPR005333 GO:0003700
Vifa3g03738 226 MobiDBLite consensus disorder prediction 26 41 - -
Vifa3g03738 226 MobiDBLite consensus disorder prediction 1 25 - -
Vifa3g03738 226 MobiDBLite consensus disorder prediction 1 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03738 Vifa-Chr3 1096085481 1096086161 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03738 23 226 TCP Transcription Factor Family AT5G23280 61.304 5.97e-76 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vifa3g03738 TCP 7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03738 K16221 - gmx:100795254 241.506