LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa3g03732	ATGTCTATGAGATCCAAGGCTCTTCATACTCTCCAGCCTATCAAATCATTGCCTCCTGGTTTCAAGGTTAATGGTAATCTTGGCCGTGATGGAATGGAAAGCCGGGGAGACTCTAAATTGAGGAGTAGTGGTTTGGTTCCGTCAAGTAGTCCCGAAAGTAATGCAATTACTGAAGAAGCTGAAGATCGTACCAGTGGCATGGGTCTTTTCAATGAGGACCTAGCATATAGTGGAAAAGTTGCAGATGAAGACTTGGAATCTGTTCCTCTTCCCTTCCAATCAGTTTCAGCATCCTCTAGGGAATCAAGGTGGAGTGATACAACACCTTATGTTTCAAAGAAGAAACTTCAGTCTTGGTTTCAACTTTCAAATGGGAATTGGGAGCTGGCAAAAATAATAACAAATTCTGGAATAGAATTAGTTATTTCATTGCCTGATGGGAAGGTTTTAAAAGTGAAACAAGACAGTTTGGTACCAGCAAATCCTGATATTCTTGATGGAGTGGATGACCTCATGCAACTTAGTTATTTAAACGAGCCTTCAGTTTTATATGATCTACAATATAGATACAATCAAAATATGATTTATACAAAAGCGGGGCCTGTTTTGGTCGCTATAAATCCTTTCAAGAAAGTTCCTCTGTACGGTAACAATTATATTGAAGCCTACCAGCGTAAGACAACTGAAAGCCCACATGTATATGCAATTACAGACACAGCAATTCGAGAAATGATACGAGATGAAGTTAATCAGTCTATAATCATCAGTGGTGAGAGTGGAGCTGGGAAGACCGAGACAGCTAAGATAGCAATGCAGTACTTGGCTGCTCTTGGAGGTGGGAGTGGAATAGAGCATGAGATATTGAAGACTAATCCAATACTAGAAGCCTTTGGTAATGCTAAAACTTTGAGAAATGACAACTCAAGTCGTTTTGGAAAGCTCATTGAGATTCACTTCAGTGAAACTGGAAAAATTTCTGGTGCTAATATTCAAACATGTAGGTTTTCTGCTGTTTATTGGTTGAAACTTGAAACTAGTGTGCCTTTTTCCCTCTAA	1056	0.3939	MSMRSKALHTLQPIKSLPPGFKVNGNLGRDGMESRGDSKLRSSGLVPSSSPESNAITEEAEDRTSGMGLFNEDLAYSGKVADEDLESVPLPFQSVSASSRESRWSDTTPYVSKKKLQSWFQLSNGNWELAKIITNSGIELVISLPDGKVLKVKQDSLVPANPDILDGVDDLMQLSYLNEPSVLYDLQYRYNQNMIYTKAGPVLVAINPFKKVPLYGNNYIEAYQRKTTESPHVYAITDTAIREMIRDEVNQSIIISGESGAGKTETAKIAMQYLAALGGGSGIEHEILKTNPILEAFGNAKTLRNDNSSRFGKLIEIHFSETGKISGANIQTCRFSAVYWLKLETSVPFSL	351

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa3g03732	351	SMART	MYSc_2a	160	350	IPR001609	GO:0003774\|GO:0005524\|GO:0016459
	Vifa3g03732	351	Pfam	Myosin head (motor domain)	168	332	IPR001609	GO:0003774\|GO:0005524\|GO:0016459
	Vifa3g03732	351	ProSiteProfiles	Myosin motor domain profile.	166	351	IPR001609	GO:0003774\|GO:0005524\|GO:0016459
	Vifa3g03732	351	MobiDBLite	consensus disorder prediction	41	55	-	-
	Vifa3g03732	351	PANTHER	MYOSIN	159	333	-	-
	Vifa3g03732	351	MobiDBLite	consensus disorder prediction	1	64	-	-
	Vifa3g03732	351	Gene3D	Kinesin motor domain	118	344	IPR036961	-
	Vifa3g03732	351	ProSiteProfiles	Myosin N-terminal SH3-like domain profile.	113	162	IPR004009	GO:0003774\|GO:0005524\|GO:0016459
	Vifa3g03732	351	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	140	334	IPR027417	-
	Vifa3g03732	351	PRINTS	Myosin heavy chain signature	292	319	IPR001609	GO:0003774\|GO:0005524\|GO:0016459
	Vifa3g03732	351	PRINTS	Myosin heavy chain signature	196	215	IPR001609	GO:0003774\|GO:0005524\|GO:0016459
	Vifa3g03732	351	PRINTS	Myosin heavy chain signature	250	275	IPR001609	GO:0003774\|GO:0005524\|GO:0016459

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa3g03732	Vifa-Chr3	1094807925	1094811495	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa3g03732	3	332	Myosins gene family	AT1G50360	63.717	2.55e-136	414

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa3g03732	-		K10357	gmx:100781736	509.22

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vifa3g03732	3	1094807925	1094811495	Vifa3g03732	3	1094807925	1094811495	ECH