Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03723 ATGGCTGGAGTAAGAGAACAAGACCAATACATGCCAATAGCAAACGTGATAAGAATAATGAGAAGGATTCTTCCATCACACGCCAAAATCTCCGATGACGCGAAAGAGACGATTCAAGAATGTGTATCTGAGTACATAAGCTTCATAACAGCAGAAGCAAACGAGAGGTGTCAAAGGGAACAGAGAAAAACCGTTACAGCAGAAGATTTGCTTTGGGCAATGGGGAAACTAGGGTTTGATGATTATGTTCATCCTTTAACATTTTATCTTCATCGTTACCGTGAAAGTGAAGGCGAACCTGCTTCTGTTAGACGCACTTCTTCTCTTGCTATGCCTCCTCCTCATCCAATGCAGCAGCAGCTTCCGTCGTTGACATTGATGCCGGTTCTTAATAATAATAGTAATAATAATTCTTATGGTTATGGTTATGGTTTTTGA 438 0.4064 MAGVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITAEANERCQREQRKTVTAEDLLWAMGKLGFDDYVHPLTFYLHRYRESEGEPASVRRTSSLAMPPPHPMQQQLPSLTLMPVLNNNSNNNSYGYGYGF 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03723 145 PRINTS CCAAT-binding transcription factor subunit A signature 38 56 - -
Vifa3g03723 145 PRINTS CCAAT-binding transcription factor subunit A signature 57 75 - -
Vifa3g03723 145 PRINTS CCAAT-binding transcription factor subunit A signature 76 94 - -
Vifa3g03723 145 FunFam Nuclear transcription factor Y subunit B-6 1 112 - -
Vifa3g03723 145 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 11 74 IPR003958 -
Vifa3g03723 145 Gene3D Histone, subunit A 2 122 IPR009072 GO:0046982
Vifa3g03723 145 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 4 115 IPR027113 GO:0001228|GO:0006355|GO:0016602
Vifa3g03723 145 SUPERFAMILY Histone-fold 7 104 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03723 Vifa-Chr3 1090945486 1090945923 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03723 4 111 CCAAT-HAP3 Transcription Factor Family AT5G47670 79.630 3.17e-61 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vifa3g03723 CBFD_NFYB_HMF 1.1e-25 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03723 K08065 - gmx:547959 205.297