Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03711 ATGGTTGAGAAAATGATGCTTTTAGAAATGGCATGTCTTGTTTTGTGCCTTTGCATGTTTGTAAATGGCACACACCATATTGAAGGCAGTGAGGCAGATGCTCTATTGAAGTGGAAAGCAAGCCTTGACAACCAAAACAAGACTCTGCTCGCTTCGTGGACTGGTAATAACTCATGTCGTTGGGAAGGAATTGAATGTCATCATGACTCTAAATCCATCTCTAAGGTAAATCTCACCAATATTGGACTAAAAGGTACGCTTCACACTCTCAATTTCTCATCACTTCAAAAACTCCATACTTTAGTTTTAAAAAACAACTTGTTCTATGGTGTTGTTCCACACCTTATTCGGGTAATGTCCAACCTAGACACTCTTGATTTTTCACAAAACAATTTCCATGGTAGTATTCCCAACACTGTTGGTAATCTCTCCAGACTCTCCTTTCTTGATTTCAGTTCCAATAATCTCACTGACACAATTCCAAGTGAGATAACCCATTTGGTTGGTCTTTATACACTTTCAATGAGTCACAATTCTTTTCTTAGTGGTTATCTTCCTCGAGAAATCGGTAGATTGAGGAATTTGACACTGCTTGATATTTCTTTTTGCAATCTCATAGGGACTATTCCAATCTCGATAGAAAAGATAACCAACATGTCACACCTTGACTTTGCAAAAAACAGCCTTTCTGGAAACATTCCTCATGGGATTTGGAAAATGGACTTAAAGTATTTGTCACTTCAAAATAATAACTTCAATGATTCCATCTCACAAAATATTTTCAAGTCACGGAACTTAGAGTCTCTTCACCTTCAAGAAAGTGGCCTTTACGGTTTCATGCCTAAGGAGTTTGGGATGTTGGGTAACTTAATAGATCTTGATATTAGTCACTGCAATCTCACAGGGTCTATCTCTATTTCTATAGGAAAATTGACCAATATATCAAGTCTCTTGTTACATGACAACCAACTTTTTGGCCAAATTCCTCGTGAAATTGGAAATTTGGCTAAGCTCAAGAATCTTTATCTTGAACATAATAGTCTTTCTGGCTCTATTCCTCGTGAAATAGGGTTTCTAAAACAACTTGACCTTCTTGATTTGTCTGCGAATGTTCTCTCTGGCACAATCCCTTCATCAATTGGAAACTTGAGCAATTTACAATTTATGTACCTTTATGCAAACCATATCATTGGAAGCATTCCTAGTGAAATTGGAAACCTCAATTCCCTCACCACAATACAAGTGAACGAAAACAGTCTTTCTGGACCAATCCCATCTTCCATTGGTAACTTGGTCAATTTGGATAGTATTTATCTTCCACAAAATAAACTTTCTGGACCAATTCCTTCCACCATCGGAAATTTAACAAAACTAACTACAATATTTTTTTACTCAAATGCTCTCACCGGACAAATCCCACATTCAATAGGTAATTTGGTCAATTTAGATTTTCTTCATCTTTCACAAAATAAACTCTCTGGGCCAATTCCATCTACTATCGGAAATTGTACAAAACTAACTATATTATCTCTTTTCTCAAATGCTCTCACTGGGAATATTCCAACCGAAATGAATAGGGTCACTGATTTGACAAGGCTTCAATTATCTAATAATAATTTCATTGGTCATTTACCTCACAATATTTGTGCTGGTGGAAAGTTAACACAGTTCACTGCTGCAGCTAACAAATTCACAGGTTTGGTTCCAAAGAGTTTGAAGAATTGCTCAAGTTTAAAGAGAGTGAGACTTGAACAAAACCAACTGACCGGAAATATATCAGATAGCTTTGGTGTATATCCAAATCTGGACTACATAGAATTGAGTGATAATAAATTTTATGGTAATCTTTCTCCAAATTGGGGAGAATGCAAGAATCTCACAAGCCTTAAAATCTCTAACAATAATTTAACAGGAACCATACCACCAGAATTGGGTGATGCAGTTAATTTAGGTGAACTTAACTTGTCTTCAAACCATCTTACTGGAAAAATTCCAAAGGAGCTAGGGAACTTATCTTTTTTGTACAAACTCTCGATAAGTAACAATCATCTTTCGGGAGAAGTTCCTGTACAAATTGCATCATTGCGTGAACTAACTTCCTTGGAGCTTGCAACAAATAATTTAAGTGGCTTCATCCCTGAAAAACTTGGAAGGTTGTCTGCATTATTGCAGTTGAATTTGAGTCACAATAAGTTTGAAGGAAACATTCCTGATGATTTTGGCCAATTGAAAGTTATTGAACAACTTGATCTAAGCAAGAATTTTTTAAATGGAACCATACCATCGATGCTGGGACAATTAAATTCTTTAGAAACATTGAATCTCTCACACAATAATCTTTCTGGTACCATTCCCTTGAGCTATGGTGTCATGTTAAGCTTGACAAATGTTGATATATCATACAATCAATTGGAGGGTCCAGTTCCAAACATTCCAGCCTTCCAAAATGCCTCATTTAACCAACTCAGAAATAACAAAGGCTTGTGTGGTAATGTCTCTGGCCTTAAGCCTTGCTCAACATCAGGTGGAAACTATCATAGTCATAAGAATAACAAAGTCTTGGTGCTTGTTTTACCCCTCACTCTAGGCACATTATTGTTAGCATTGTTTGTTTTTTGGATCTCATATCATCTATATCAAATTTCAAGAAAAAAAGATTTAAAGGCCCGTGACACTATAAATCTTTTTTCTATATGGAGTTTTGATGGGAAAATGGTGTATGAGAATATTATTGAAGCCACAGAAGAGTTTGACAACAAGCATCTCATTGGAGTTGGAGGGCATGGAAGTGTTTACAGAGCTGAATTGCCCACAGGTCAAGTTGTTGCTGTGAAAAAAATCCATTCATTACAAAATGAAGAAATGTCCAATCTGAAAGCTTTTGAGAGTGAGATTCGTGCTTTGACAGAGATTCGACATCGGAACATTGTGAAGTTATATGGGTTTTGTTCACATTCACTACACTCATTTTTGGTTTATGAATTCTTGGAAAAGGGTAGCATGGACAACATTTTGAAGGAGAATGAAACATCTGGTGAATTTGATTGGAAGAGGAGGGTGAATGTCATTAAAGATGTTGCAAATGCTTTATCTTATATGCATCATGATTGCTCACCTCCAATTGTTCATCGTGATATATCCAGCAAGAATGTTATTTTGAATTTGGAATATGTCGCTCATGTTTCGGACTTCGGAACATCTAAGTTTCTAAATCCCAATTCATCCAATATGACTTCTTTTGCAGGAACGTTTGGATATGCAGCTCCAGAACTAGCATACACAATGGAAGTAAATGAAAAATGTGATGTGTATAGTTTTGGAATATTAACTTTAGAGATACTTTTTGGGAAGCATCCGGGAGATATTGTAACTTGTTTGTGGCAACAATCTTCAGAAAGTGTTATGGACCTGACACTTGATACTTTGCCATGGATGGAGAAGTTGGACCAGCGTCTCCCATATCCCAGAAACAATGTTCAAAAGGACGTGAGTTTGATGATAAGGATAGCAATTTCATGTTTAACCGAAAGTCCAAGATCTCGCCCTACCATGGAGCATGTCTGCAAAAAGCTTATAATGTTTCATCTGAAACTGGATGTGGATACTTTCAATGGTTCTATGATGATGTTGTGGATGAGAAAGAGCAGTTTATAA 3654 0.3648 MVEKMMLLEMACLVLCLCMFVNGTHHIEGSEADALLKWKASLDNQNKTLLASWTGNNSCRWEGIECHHDSKSISKVNLTNIGLKGTLHTLNFSSLQKLHTLVLKNNLFYGVVPHLIRVMSNLDTLDFSQNNFHGSIPNTVGNLSRLSFLDFSSNNLTDTIPSEITHLVGLYTLSMSHNSFLSGYLPREIGRLRNLTLLDISFCNLIGTIPISIEKITNMSHLDFAKNSLSGNIPHGIWKMDLKYLSLQNNNFNDSISQNIFKSRNLESLHLQESGLYGFMPKEFGMLGNLIDLDISHCNLTGSISISIGKLTNISSLLLHDNQLFGQIPREIGNLAKLKNLYLEHNSLSGSIPREIGFLKQLDLLDLSANVLSGTIPSSIGNLSNLQFMYLYANHIIGSIPSEIGNLNSLTTIQVNENSLSGPIPSSIGNLVNLDSIYLPQNKLSGPIPSTIGNLTKLTTIFFYSNALTGQIPHSIGNLVNLDFLHLSQNKLSGPIPSTIGNCTKLTILSLFSNALTGNIPTEMNRVTDLTRLQLSNNNFIGHLPHNICAGGKLTQFTAAANKFTGLVPKSLKNCSSLKRVRLEQNQLTGNISDSFGVYPNLDYIELSDNKFYGNLSPNWGECKNLTSLKISNNNLTGTIPPELGDAVNLGELNLSSNHLTGKIPKELGNLSFLYKLSISNNHLSGEVPVQIASLRELTSLELATNNLSGFIPEKLGRLSALLQLNLSHNKFEGNIPDDFGQLKVIEQLDLSKNFLNGTIPSMLGQLNSLETLNLSHNNLSGTIPLSYGVMLSLTNVDISYNQLEGPVPNIPAFQNASFNQLRNNKGLCGNVSGLKPCSTSGGNYHSHKNNKVLVLVLPLTLGTLLLALFVFWISYHLYQISRKKDLKARDTINLFSIWSFDGKMVYENIIEATEEFDNKHLIGVGGHGSVYRAELPTGQVVAVKKIHSLQNEEMSNLKAFESEIRALTEIRHRNIVKLYGFCSHSLHSFLVYEFLEKGSMDNILKENETSGEFDWKRRVNVIKDVANALSYMHHDCSPPIVHRDISSKNVILNLEYVAHVSDFGTSKFLNPNSSNMTSFAGTFGYAAPELAYTMEVNEKCDVYSFGILTLEILFGKHPGDIVTCLWQQSSESVMDLTLDTLPWMEKLDQRLPYPRNNVQKDVSLMIRIAISCLTESPRSRPTMEHVCKKLIMFHLKLDVDTFNGSMMMLWMRKSSL 1217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03711 1217 ProSiteProfiles Leucine-rich repeat profile. 769 790 IPR001611 GO:0005515
Vifa3g03711 1217 SMART LRR_sd22_2 359 385 - -
Vifa3g03711 1217 SMART LRR_sd22_2 431 446 - -
Vifa3g03711 1217 SMART LRR_sd22_2 455 481 - -
Vifa3g03711 1217 SMART LRR_sd22_2 335 350 - -
Vifa3g03711 1217 SMART LRR_sd22_2 143 166 - -
Vifa3g03711 1217 SMART LRR_sd22_2 192 221 - -
Vifa3g03711 1217 ProSitePatterns Protein kinases ATP-binding region signature. 923 946 IPR017441 GO:0005524
Vifa3g03711 1217 FunFam LRR receptor-like serine/threonine-protein kinase 458 527 - -
Vifa3g03711 1217 Gene3D Ribonuclease Inhibitor 181 241 IPR032675 -
Vifa3g03711 1217 SUPERFAMILY L domain-like 561 830 - -
Vifa3g03711 1217 PANTHER LEUCINE RICH REPEAT KINASE 2 181 474 - -
Vifa3g03711 1217 Gene3D Phosphorylase Kinase; domain 1 879 995 - -
Vifa3g03711 1217 FunFam Leucine-rich repeat receptor protein kinase MSP1 880 995 - -
Vifa3g03711 1217 Gene3D Ribonuclease Inhibitor 530 841 IPR032675 -
Vifa3g03711 1217 SUPERFAMILY Protein kinase-like (PK-like) 895 1192 IPR011009 -
Vifa3g03711 1217 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 528 842 - -
Vifa3g03711 1217 FunFam MDIS1-interacting receptor like kinase 2 996 1197 - -
Vifa3g03711 1217 Pfam Protein kinase domain 918 1190 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03711 1217 Pfam Leucine rich repeat 696 754 IPR001611 GO:0005515
Vifa3g03711 1217 Gene3D Ribonuclease Inhibitor 426 527 IPR032675 -
Vifa3g03711 1217 Gene3D Ribonuclease Inhibitor 242 328 IPR032675 -
Vifa3g03711 1217 ProSiteProfiles Protein kinase domain profile. 917 1198 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03711 1217 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 237 457 - -
Vifa3g03711 1217 SUPERFAMILY RNI-like 245 589 - -
Vifa3g03711 1217 SMART LRR_typ_2 767 789 IPR003591 -
Vifa3g03711 1217 SMART LRR_typ_2 623 647 IPR003591 -
Vifa3g03711 1217 SMART LRR_typ_2 311 334 IPR003591 -
Vifa3g03711 1217 SMART LRR_typ_2 335 359 IPR003591 -
Vifa3g03711 1217 SMART LRR_typ_2 143 167 IPR003591 -
Vifa3g03711 1217 SMART LRR_typ_2 719 743 IPR003591 -
Vifa3g03711 1217 SMART LRR_typ_2 527 551 IPR003591 -
Vifa3g03711 1217 SMART LRR_typ_2 383 407 IPR003591 -
Vifa3g03711 1217 SMART LRR_typ_2 479 503 IPR003591 -
Vifa3g03711 1217 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1041 1053 IPR008266 GO:0004672|GO:0006468
Vifa3g03711 1217 Pfam Leucine rich repeat N-terminal domain 30 66 IPR013210 -
Vifa3g03711 1217 Gene3D Transferase(Phosphotransferase) domain 1 996 1202 - -
Vifa3g03711 1217 SUPERFAMILY L domain-like 66 330 - -
Vifa3g03711 1217 PRINTS Leucine-rich repeat signature 626 639 - -
Vifa3g03711 1217 PRINTS Leucine-rich repeat signature 767 780 - -
Vifa3g03711 1217 FunFam Nuclear pore complex protein NUP107 28 182 - -
Vifa3g03711 1217 Gene3D Ribonuclease Inhibitor 329 425 IPR032675 -
Vifa3g03711 1217 Gene3D Ribonuclease Inhibitor 28 180 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03711 Vifa-Chr3 1088503727 1088517879 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03711 192 739 Receptor kinase-like Gene Family AT4G08850 36.066 1.03e-91 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa3g03711 Pkinase 6.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03711 - - tpra:123910542 1610.89