Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03710 ATGGTTGAGAAAATGATGCTTTTAGAAATGGCATGTCTTGTTTTGTGCCTTTGCATGTTTGTAAATGGCACACACCATATTGAAGGCAGTGAGGCAGATGCTCTATTGAAGTGGAAAGCAAGCCTTGACAACCAAAACAAGACTCTGCTCGCTTCGTGGACTGGTAATAACTCATGTCGTTGGGAAGGAATTGAATGTCATCATGACTCTAAATCCATCTCTAAGGTAAATCTCACCAATATTGGACTAAAAGGTACGCTTCACACTCTCAATTTCTCATCACTTCAAAAACTCCATACTTTAGTTTTAAAAAACAACTTGTTCTATGGTGTTGTTCCACACCTTATTCGGGTAATGTCCAACCTAGACACTCTTGATTTTTCACAAAACAATTTCCATGGTAGTATTCCCAACACTGTTGGTAATCTCTCCAGACTCTCCTTTCTTGATTTCAGTTCCAATAATCTCACTGACACAATTCCAAGTGAGATAACCCATTTGGTTGGTCTTTATACACTTTCAATGAGTCACAATTCTTTTCTTAGTGGTTATCTTCCTCGAGAAATCGGTAGATTGAGGAATTTGACACTGCTTGATATTTCTTTTTGCAATCTCATAGGGACTATTCCAATCTCGATAGAAAAGATAACCAACATGTCACACCTTGACTTTGCAAAAAACAGCCTTTCTGGAAACATTCCTCATGGGATTTGGAAAATGGACTTAAAGTATTTGTCACTTCAAAATAATAACTTCAATGATTCCATCTCACAAAATATTTTCAAGTCACGGAACTTAGAGTCTCTTCACCTTCAAGAAAGTGGCCTTTACGGTTTCATGCCTAAGGAGTTTGGGATGTTGGGTAACTTAATAGATCTTGATATTAGTCACTGCAATCTCACAGGGTCTATCTCTATTTCTATAGGAAAATTGACCAATATATCAAGTCTCTTGTTACATGACAACCAACTTTTTGGCCAAATTCCTCGTGAAATTGGAAATTTGGCTAAGCTCAAGAATCTTTATCTTGAACATAATAGTCTTTCTGGCTCTATTCCTCGTGAAATAGGGTTTCTAAAACAACTTGACCTTCTTGATTTGTCTGCGAATGTTCTCTCTGGCACAATCCCTTCATCAATTGGAAACTTGAGCAATTTACAATTTATGTACCTTTATGCAAACCATATCATTGGAAGCATTCCTAGTGAAATTGGAAACCTCAATTCCCTCACCACAATACAAGTGAACGAAAACAGTCTTTCTGGACCAATCCCATCTTCCATTGGTAACTTGGTCAATTTGGATAGTATTTATCTTCCACAAAATAAACTTTCTGGACCAATTCCTTCCACCATCGGAAATTTAACAAAACTAACTACAATATTTTTTTACTCAAATGCTCTCACCGGACAAATCCCACATTCAATAGGTAATTTGGTCAATTTAGATTTTCTTCATCTTTCACAAAATAAACTCTCTGGGCCAATTCCATCTACTATCGGAAATTGTACAAAACTAACTATATTATCTCTTTTCTCAAATGCTCTCACTGGGAATATTCCAACCGAAATGAATAGGGTCACTGATTTGACAAGGCTTCAATTATCTAATAATAATTTCATTGGTCATTTACCTCACAATATTTGTGCTGGTGGAAAGTTAACACAGTTCACTGCTGCAGCTAACAAATTCACAGGTTTGGTTCCAAAGAGTTTGAAGAATTGCTCAAGTTTAAAGAGAGTGAGACTTGAACAAAACCAACTGACCGGAAATATATCAGATAGCTTTGGTGTATATCCAAATCTGGACTACATAGAATTGAGTGATAATAAATTTTATGGTAATCTTTCTCCAAATTGGGGAGAATGCAAGAATCTCACAAGCCTTAAAATCTCTAACAATAATTTAACAGGAACCATACCACCAGAATTGGGTGATGCAGTTAATTTAGGTGAACTTAACTTGTCTTCAAACCATCTTACTGGAAAAATTCCAAAGGAGCTAGGGAACTTATCTTTTTTGTACAAACTCTCGATAAGTAACAATCATCTTTCGGGAGAAGTTCCTGTACAAATTGCATCATTGCGTGAACTAACTTCCTTGGAGCTTGCAACAAATAATTTAAGTGGCTTCATCCCTGAAAAACTTGGAAGGTTGTCTGCATTATTGCAGTTGAATTTGAGTCACAATAAGTTTGAAGGAAACATTCCTGATGATTTTGGCCAATTGAAAGTTATTGAACAACTTGATCTAAGCAAGAATTTTTTAAATGGAACCATACCATCGATGCTGGGACAATTAAATTCTTTAGAAACATTGAATCTCTCACACAATAATCTTTCTGGTACCATTCCCTTGAGCTATGGTGTCATGTTAAGCTTGACAAATGTTGATATATCATACAATCAATTGGAGGGTCCAGTTCCAAACATTCCAGCCTTCCAAAATGCCTCATTTAACCAACTCAGAAATAACAAAGGCTTGTGTGGTAATGTCTCTGGCCTTAAGCCTTGCTCAACATCAGGTGGAAACTATCATAGTCATAAGAATAACAAAGTCTTGGTGCTTGTTTTACCCCTCACTCTAGGCACATTATTGTTAGCATTGTTTGTTTTTTGGATCTCATATCATCTATATCAAATTTCAAGAAAAAAAGATTTAAAGGCCCGTGACACTATAAATCTTTTTTCTATATGGAGTTTTGATGGGAAAATGGTGTATGAGAATATTATTGAAGCCACAGAAGAGTTTGACAACAAGCATCTCATTGGAGTTGGAGGGCATGGAAGTGTTTACAGAGCTGAATTGCCCACAGGTCAAGTTGTTGCTGTGAAAAAAATCCATTCATTACAAAATGAAGAAATGTCCAATCTGAAAGCTTTTGAGAGTGAGATTCGTGCTTTGACAGAGATTCGACATCGGAACATTGTGAAGTTATATGGGTTTTGTTCACATTCACTACACTCATTTTTGGTTTATGAATTCTTGGAAAAGGGTAGCATGGACAACATTTTGAAGGAGAATGAAACATCTGGTGAATTTGATTGGAAGAGGAGGGTGAATGTCATTAAAGATGTTGCAAATGCTTTATCTTATATGCATCATGATTGCTCACCTCCAATTGTTCATCGTGATATATCCAGCAAGAATGTTATTTTGAATTTGGAATATGTCGCTCATGTTTCGGACTTCGGAACATCTAAGTTTCTAAATCCCAATTCATCCAATATGACTTCTTTTGCAGGAACGTTTGGATATGCAGCTCCAGAACTAGCATACACAATGGAAGTAAATGAAAAATGTGATGTGTATAGTTTTGGAATATTAACTTTAGAGATACTTTTTGGGAAGCATCCGGGAGATATTGTAACTTGTTTGTGGCAACAATCTTCAGAAAGTGTTATGGACCTGACACTTGATACTTTGCCATGGATGGAGAAGTTGGACCAGCGTCTCCCATATCCCAGAAACAATGTTCAAAAGGACGTGAGTTTGATGATAAGGATAGCAATTTCATGTTTAACCGAAAGTCCAAGATCTCGCCCTACCATGGAGCATGTCTGCAAAAAGCTTATAATATCTTCCGATTATTGTTCTTGA 3600 0.3647 MVEKMMLLEMACLVLCLCMFVNGTHHIEGSEADALLKWKASLDNQNKTLLASWTGNNSCRWEGIECHHDSKSISKVNLTNIGLKGTLHTLNFSSLQKLHTLVLKNNLFYGVVPHLIRVMSNLDTLDFSQNNFHGSIPNTVGNLSRLSFLDFSSNNLTDTIPSEITHLVGLYTLSMSHNSFLSGYLPREIGRLRNLTLLDISFCNLIGTIPISIEKITNMSHLDFAKNSLSGNIPHGIWKMDLKYLSLQNNNFNDSISQNIFKSRNLESLHLQESGLYGFMPKEFGMLGNLIDLDISHCNLTGSISISIGKLTNISSLLLHDNQLFGQIPREIGNLAKLKNLYLEHNSLSGSIPREIGFLKQLDLLDLSANVLSGTIPSSIGNLSNLQFMYLYANHIIGSIPSEIGNLNSLTTIQVNENSLSGPIPSSIGNLVNLDSIYLPQNKLSGPIPSTIGNLTKLTTIFFYSNALTGQIPHSIGNLVNLDFLHLSQNKLSGPIPSTIGNCTKLTILSLFSNALTGNIPTEMNRVTDLTRLQLSNNNFIGHLPHNICAGGKLTQFTAAANKFTGLVPKSLKNCSSLKRVRLEQNQLTGNISDSFGVYPNLDYIELSDNKFYGNLSPNWGECKNLTSLKISNNNLTGTIPPELGDAVNLGELNLSSNHLTGKIPKELGNLSFLYKLSISNNHLSGEVPVQIASLRELTSLELATNNLSGFIPEKLGRLSALLQLNLSHNKFEGNIPDDFGQLKVIEQLDLSKNFLNGTIPSMLGQLNSLETLNLSHNNLSGTIPLSYGVMLSLTNVDISYNQLEGPVPNIPAFQNASFNQLRNNKGLCGNVSGLKPCSTSGGNYHSHKNNKVLVLVLPLTLGTLLLALFVFWISYHLYQISRKKDLKARDTINLFSIWSFDGKMVYENIIEATEEFDNKHLIGVGGHGSVYRAELPTGQVVAVKKIHSLQNEEMSNLKAFESEIRALTEIRHRNIVKLYGFCSHSLHSFLVYEFLEKGSMDNILKENETSGEFDWKRRVNVIKDVANALSYMHHDCSPPIVHRDISSKNVILNLEYVAHVSDFGTSKFLNPNSSNMTSFAGTFGYAAPELAYTMEVNEKCDVYSFGILTLEILFGKHPGDIVTCLWQQSSESVMDLTLDTLPWMEKLDQRLPYPRNNVQKDVSLMIRIAISCLTESPRSRPTMEHVCKKLIISSDYCS 1199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03710 1199 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 528 842 - -
Vifa3g03710 1199 FunFam Nuclear pore complex protein NUP107 28 180 - -
Vifa3g03710 1199 ProSiteProfiles Leucine-rich repeat profile. 769 790 IPR001611 GO:0005515
Vifa3g03710 1199 SMART LRR_sd22_2 359 385 - -
Vifa3g03710 1199 SMART LRR_sd22_2 431 446 - -
Vifa3g03710 1199 SMART LRR_sd22_2 455 481 - -
Vifa3g03710 1199 SMART LRR_sd22_2 335 350 - -
Vifa3g03710 1199 SMART LRR_sd22_2 143 166 - -
Vifa3g03710 1199 SMART LRR_sd22_2 192 221 - -
Vifa3g03710 1199 PANTHER LEUCINE RICH REPEAT KINASE 2 92 474 - -
Vifa3g03710 1199 FunFam MDIS1-interacting receptor like kinase 2 996 1197 - -
Vifa3g03710 1199 ProSitePatterns Protein kinases ATP-binding region signature. 923 946 IPR017441 GO:0005524
Vifa3g03710 1199 Pfam Leucine rich repeat N-terminal domain 30 66 IPR013210 -
Vifa3g03710 1199 FunFam LRR receptor-like serine/threonine-protein kinase 458 527 - -
Vifa3g03710 1199 SUPERFAMILY L domain-like 265 546 - -
Vifa3g03710 1199 Gene3D Ribonuclease Inhibitor 242 369 IPR032675 -
Vifa3g03710 1199 SUPERFAMILY Protein kinase-like (PK-like) 895 1192 IPR011009 -
Vifa3g03710 1199 Gene3D Ribonuclease Inhibitor 370 474 IPR032675 -
Vifa3g03710 1199 Gene3D Ribonuclease Inhibitor 28 180 IPR032675 -
Vifa3g03710 1199 PRINTS Leucine-rich repeat signature 626 639 - -
Vifa3g03710 1199 PRINTS Leucine-rich repeat signature 767 780 - -
Vifa3g03710 1199 Pfam Protein kinase domain 918 1190 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03710 1199 Gene3D Phosphorylase Kinase; domain 1 879 995 - -
Vifa3g03710 1199 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 237 457 - -
Vifa3g03710 1199 SUPERFAMILY L domain-like 57 374 - -
Vifa3g03710 1199 FunFam Leucine-rich repeat receptor protein kinase MSP1 880 995 - -
Vifa3g03710 1199 Pfam Leucine rich repeat 696 754 IPR001611 GO:0005515
Vifa3g03710 1199 Gene3D Transferase(Phosphotransferase) domain 1 996 1196 - -
Vifa3g03710 1199 ProSiteProfiles Protein kinase domain profile. 917 1193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03710 1199 Gene3D Ribonuclease Inhibitor 181 241 IPR032675 -
Vifa3g03710 1199 Gene3D Ribonuclease Inhibitor 485 548 IPR032675 -
Vifa3g03710 1199 SMART LRR_typ_2 623 647 IPR003591 -
Vifa3g03710 1199 SMART LRR_typ_2 767 789 IPR003591 -
Vifa3g03710 1199 SMART LRR_typ_2 311 334 IPR003591 -
Vifa3g03710 1199 SMART LRR_typ_2 335 359 IPR003591 -
Vifa3g03710 1199 SMART LRR_typ_2 143 167 IPR003591 -
Vifa3g03710 1199 SMART LRR_typ_2 719 743 IPR003591 -
Vifa3g03710 1199 SMART LRR_typ_2 527 551 IPR003591 -
Vifa3g03710 1199 SMART LRR_typ_2 383 407 IPR003591 -
Vifa3g03710 1199 SMART LRR_typ_2 479 503 IPR003591 -
Vifa3g03710 1199 SUPERFAMILY RNI-like 485 814 - -
Vifa3g03710 1199 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1041 1053 IPR008266 GO:0004672|GO:0006468
Vifa3g03710 1199 Gene3D Ribonuclease Inhibitor 549 841 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03710 Vifa-Chr3 1088503727 1088512757 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03710 192 739 Receptor kinase-like Gene Family AT4G08850 36.066 5.28e-92 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa3g03710 Pkinase 6.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03710 - - tpra:123910542 1613.2