Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03709 ATGTCCAACCTATACACTCTTGATTTTTCACAAAACAATTTCCATGGTAGTATTCCCAACACTGTTGGTAATCTGTCCCAACTCTCCTTTCTTGATCTTAGTGAGAATCATTATCTCACAGGGATTATTCCATATGAGATAGGTAGACTGAGAAATCTGAAAATACTTGATCTTCATAGTTGTAATCTCACAGGGACTATACCATTATCAATAGGAGTGTTGGCCAATATATCAATTCTCAACTTATATGACAACCAACTTTTTGGTCACATTCCTTTAACTATTGGAAATTTAACGAAATTAAGTAAACTAACTCTTTTCTCAAATGCTCTCAGTGGAAAAATTCCACATTCTATAGATAACTTAGTCAATTTGAATATTATTGACCTTTCACAGAATAAATTCTCTGGATCAATTCCTTCCACTATCAGAAATTTAACGAGAGTAAATGTTTTATATCTATTCTCAAATGATTTCATGGGACAAATTCCATCTTCTATAAGTAACTTGGCCAATCTGTATTCCGTTTTGCTTCATGACAATGAACTCTCTGGACCAATTCCTTCCACTATTGGAAATTTAACAAAACTAAGTGCAATATCTTTTTCCTTAAATGCTCTCACCGGACAAATCCCACCTTCCATAGGTAACTTGGTCAATTTGGATACTGTTTATCTTTCACAAAATAAATTGTCTGGACGGATTCCTTCCACCTTTGGAAATTTAACAAAACTAACTATATTATCTCTTTTCTCAAATGCTCTCACTGGAAACATTCCAACTGAAATGAATAGACTTACAGATTTGGAATCACTCCAGTTAGGTTACAATAATTTCATAGGTGATTTACCTCGCAACATTTGTGTTGGTGGGAAGTTGATTTATTTGAGTATTTATAATAACCAATTTACGGGCCTAATTCCATATAGTTTGAAGAATTGCTCAAGTTTAAAGAGAGTTAGACTTGAACAAAACAGATTAATTGATAATATAACAAATGGGTTTGGTGTGTATCCGAATTTGGTCTACATGGAATTAAGTAATAATAATTTTTATGGACATCTATCATCAAATTGGGGAAAGTGCAAGAATCTCACAAGCCTAAAAAACTCCAATAACAATTTAACAGGAACCATACGACCAGAATTGGGTGATGCAGTTAATTTAGATGAACTTAACTTGTCTTCAAACCATCTTACCGGAAAAATTCCAAAGGAGCTAGGGAACTTATCTTTGTTGTACAAACTCTCGATAAGTAACAATCATCTTTCGGGAGAAGTTCCTGTACAAATTGCATCATTGCGTGAACTAACTTCCTTGGAGCTTGCAACAAATAATTTAAGTGGCTTCATCCCTGAAAAACTTGGAAGGTTGTCTGCATTATTGCAGTTGAATTTGAGCCACAATAAGTTTGAAGGAAACATTCCTGATGATTTTGGCCAATTGGAAGTTATTGAACAACTTGATCTAAGCAAGAATTTTTTAAATGGAACCATACCATCGATGCTGGGACAATTAAATTCTTTAGAAACATTGAATCTCTCACACAATAATCTTTCTGGTACCATTCCCTTGAGCTATGGTGACATGTTAAGCTTGACAAATGTTGATATATCATACAATCAATTGGAGGGTCCAGTTCCAAACATTCCAGCCTTCCAAAATGCCTCATTTAACCAACTCAGAAATAACAAAGGCTTGTGTGGTAATGTCTCTGGCCTTAAGCCTTGCTCAACATCAGGTGGAAACTATCATAGTCATAAGAATAACAAAATCTTGGTGCTTGTTTTACCCGTCACTCTAGGCACATTATTGTCAGCATCATTTGTTTTTTGGATCTCATATCATCTATATCAAATTTCAAGAAAAAAAGATTTAAAGGCTCCTGAAGAATCAGACAATGTAAATCTTTTTTCTATATGGAGTTTTGATGGGAAAATGGTGTATGAGAATATTATTGAAGCCACAGAAGAGTTTGACAACAAGCATCTCATTGGAGTTGGAGGGCATGGAAGTGTTTACAGAGCTGAATTGCCCACAGGTCAAGTTGTTGCTGTGAAAAAAATCCATTCATTACAAAATGAAGAAATGTCCAATCTGAAAGCTTTTGAGAGTGAGATTCGTGCTTTGACAGAGATTCGACATCGGAACATTGTGAAGTTATATGGGTTTTGTTCATATTCACTACACTCATTTTTGGTTTATGAATTCTTGGAAAAGGGTAGCATGGACAACATTTTGAAGGAGAATGAAACATCTGGTGAATTTGATTGGAAGAGGAGGGTGAATGTCATTAAAGATGTTGCAAATGCTTTATCTTATATGCATCATGATTGCACACCTCCCATTGTTCATCGTGATATATCCAGCAAGAATGTTATTTTGAATTTGGAATATGTCGCTCATGTTTCGGACTTCGGAACATCTAAGTTTCTAAATCCCAATTCATCCAATATGACTTCTTTTGCAGGAACGTTTGGATATGCAGCTCCAGAGCTAGCATACACAATGGAAGTAAATGAAAAATGTGATGTGTATAGTTTTGGAATATTAACTTTAGAGATACTTTTTGGGAAGCATCCGGGAGATATTGTAACTTGTTTGTGGCAACAATCTTCAGAAAGTGTTATGGACCTCACACTTGATACTTTGCCATGGATGGAGAAGTTGGACCAGCGTCTCCCATATCCCAGAAACAATGTTCAAAAGGACGTGAGTTTGATGATAAGGATAGCAATTTCATGTTTAACCGAAAGTCCAAGATCTCGCCCTACCATGGAGCAGGTCTGCAAAAAGCTTGTAATGTTTACTATAGAAAACTACGACCATTATGATTCCAACGACGTTCGATGTCGTGATAGTGATACATCTGATGCTAAATCAGACTATGCTCGGGATGACAACAATTCGGTATCTAGTGCGTTCCAAAGTTCAGATGATGGTGATGGCGATGATAATAGTCACAACGCAGATTCTATTGAAACAAATGCAGTTGTAGGTGATAGAAAAGTGAATATTAATGTCCTTACTGCTGATGAAATTCGTGCTATGGAGTTCAGTACAGTTGATGAAGCTAATGAATTTTATTTTAATTTGTATGCAATAAACACGGTTTAA 3117 0.3548 MSNLYTLDFSQNNFHGSIPNTVGNLSQLSFLDLSENHYLTGIIPYEIGRLRNLKILDLHSCNLTGTIPLSIGVLANISILNLYDNQLFGHIPLTIGNLTKLSKLTLFSNALSGKIPHSIDNLVNLNIIDLSQNKFSGSIPSTIRNLTRVNVLYLFSNDFMGQIPSSISNLANLYSVLLHDNELSGPIPSTIGNLTKLSAISFSLNALTGQIPPSIGNLVNLDTVYLSQNKLSGRIPSTFGNLTKLTILSLFSNALTGNIPTEMNRLTDLESLQLGYNNFIGDLPRNICVGGKLIYLSIYNNQFTGLIPYSLKNCSSLKRVRLEQNRLIDNITNGFGVYPNLVYMELSNNNFYGHLSSNWGKCKNLTSLKNSNNNLTGTIRPELGDAVNLDELNLSSNHLTGKIPKELGNLSLLYKLSISNNHLSGEVPVQIASLRELTSLELATNNLSGFIPEKLGRLSALLQLNLSHNKFEGNIPDDFGQLEVIEQLDLSKNFLNGTIPSMLGQLNSLETLNLSHNNLSGTIPLSYGDMLSLTNVDISYNQLEGPVPNIPAFQNASFNQLRNNKGLCGNVSGLKPCSTSGGNYHSHKNNKILVLVLPVTLGTLLSASFVFWISYHLYQISRKKDLKAPEESDNVNLFSIWSFDGKMVYENIIEATEEFDNKHLIGVGGHGSVYRAELPTGQVVAVKKIHSLQNEEMSNLKAFESEIRALTEIRHRNIVKLYGFCSYSLHSFLVYEFLEKGSMDNILKENETSGEFDWKRRVNVIKDVANALSYMHHDCTPPIVHRDISSKNVILNLEYVAHVSDFGTSKFLNPNSSNMTSFAGTFGYAAPELAYTMEVNEKCDVYSFGILTLEILFGKHPGDIVTCLWQQSSESVMDLTLDTLPWMEKLDQRLPYPRNNVQKDVSLMIRIAISCLTESPRSRPTMEQVCKKLVMFTIENYDHYDSNDVRCRDSDTSDAKSDYARDDNNSVSSAFQSSDDGDGDDNSHNADSIETNAVVGDRKVNINVLTADEIRAMEFSTVDEANEFYFNLYAINTV 1038
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03709 1038 FunFam Leucine-rich repeat receptor protein kinase MSP1 621 737 - -
Vifa3g03709 1038 Gene3D Transferase(Phosphotransferase) domain 1 738 956 - -
Vifa3g03709 1038 Gene3D Ribonuclease Inhibitor 289 580 IPR032675 -
Vifa3g03709 1038 Pfam Protein kinase domain 660 932 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03709 1038 MobiDBLite consensus disorder prediction 949 965 - -
Vifa3g03709 1038 SUPERFAMILY Protein kinase-like (PK-like) 636 935 IPR011009 -
Vifa3g03709 1038 Pfam Leucine Rich Repeat 52 74 IPR001611 GO:0005515
Vifa3g03709 1038 Pfam Leucine Rich Repeat 388 410 IPR001611 GO:0005515
Vifa3g03709 1038 Pfam Leucine rich repeat 435 493 IPR001611 GO:0005515
Vifa3g03709 1038 Pfam Leucine rich repeat 220 279 IPR001611 GO:0005515
Vifa3g03709 1038 FunFam MDIS1-interacting receptor like kinase 2 738 939 - -
Vifa3g03709 1038 PANTHER LEUCINE RICH REPEAT KINASE 2 2 213 - -
Vifa3g03709 1038 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 267 581 - -
Vifa3g03709 1038 ProSiteProfiles Leucine-rich repeat profile. 388 411 IPR001611 GO:0005515
Vifa3g03709 1038 ProSiteProfiles Leucine-rich repeat profile. 508 529 IPR001611 GO:0005515
Vifa3g03709 1038 Gene3D Phosphorylase Kinase; domain 1 621 737 - -
Vifa3g03709 1038 SMART LRR_typ_2 1 25 IPR003591 -
Vifa3g03709 1038 SMART LRR_typ_2 122 146 IPR003591 -
Vifa3g03709 1038 SMART LRR_typ_2 266 290 IPR003591 -
Vifa3g03709 1038 SMART LRR_typ_2 458 482 IPR003591 -
Vifa3g03709 1038 SMART LRR_typ_2 387 410 IPR003591 -
Vifa3g03709 1038 SMART LRR_typ_2 50 74 IPR003591 -
Vifa3g03709 1038 SMART LRR_typ_2 506 528 IPR003591 -
Vifa3g03709 1038 SMART LRR_typ_2 218 241 IPR003591 -
Vifa3g03709 1038 Gene3D Ribonuclease Inhibitor 1 288 IPR032675 -
Vifa3g03709 1038 MobiDBLite consensus disorder prediction 949 994 - -
Vifa3g03709 1038 MobiDBLite consensus disorder prediction 966 980 - -
Vifa3g03709 1038 ProSitePatterns Protein kinases ATP-binding region signature. 665 688 IPR017441 GO:0005524
Vifa3g03709 1038 SUPERFAMILY RNI-like 178 548 - -
Vifa3g03709 1038 SUPERFAMILY L domain-like 2 237 - -
Vifa3g03709 1038 ProSiteProfiles Protein kinase domain profile. 659 936 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03709 1038 FunFam Leucine-rich repeat receptor-like protein kinase TDR 1 265 - -
Vifa3g03709 1038 ProSitePatterns Tyrosine protein kinases specific active-site signature. 783 795 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03709 Vifa-Chr3 1088345152 1088349672 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03709 1 831 Receptor kinase-like Gene Family AT4G08850 45.595 0.0 713
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa3g03709 Pkinase 4.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03709 - - tpra:123910542 1231.08