Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03708 ATGCTTGAGAAAATGATGCTTTTAGAAATGGCATGTCTTGTTTTGTGCGTTTGCATGTTTGTAAATGGCACACACCATATTGAAGGCAGTGAGGCAGATGCTCTATTGAAGTGGAAAGCAAGCCTTGACAACCAAAACAAGACTCTGCTCGCTTCGTGGACTGGTAATAACCCATGTCGTTGGGAAGGAATTGAATGTCATCATGACTCTAAATCCATCTCTAAGGTAAATCTCACCAATATTGGACTAAAAGGTACGCTTCACACTCTCAATTTCTCATCACTTCAAAAACTCCATAGTTTAGTTTTAAAAAACAACTTGTTCTATGGTGTTGTTCCACACCTTATTCGGGTAATGTCCAACCTAGACACTCTTGATTTTTCACAAAACAATTTCCATGGTAGTATTCCCAACACTGTTGGTAATCTCTCCAGACTCTCCTTTCTTGATTTCAGTTCCAATAATCTCACTGACACAATTCCAAGTGAGATAACCCATTTGGTTGGTCTTTATACACTTTCAATGAGTCACAATTCTTTTCTTAGTGGTTATCTTCCTCGAGAAATCGGTAGACTGAGGAATTTGACACTGCTTGATATTTCTTTTTGCAATCTCATAGGGACTATTCCAATCTCGATAGAAAAGATAACCAACATGTCACACCTTGACTTTGCAAAAAACAGCCTTTCTGGAAACATTCCTCATGGGATTTGGAAAATGGACTTAAAGTATTTGTCACTTCAAAATAATAACTTCAATGATTCCATCTCACAAAATATTTTCAAGTCACGGAACCTAGAGTTTCTTCATCTTCAAGAAAGTGGCCTTTACGGTTTCATGCCTAAGGAGTTTGAGATGTTGGGTAACTTAATAGATCTTGATATTAGTCACTGCAATCTCACAGGGTCTATCTCTATTTCTATAGGAAAATTGACCAATATATCAAGTCTCTTGTTAAATAACAACCAACTTTTTGGCCAAATTCCTCGTGAAATTGGAAATTTGGCTAAGCTCAAGAATCTTTTTCTTGAACATAATAGTCTTTCTGGCTCTATTCCTCGTGAAATAGGGTTTCTAAAACAACTTGACCTTCTTGATTTGTCTACGAATGTTCTCTCTGGCACAATCCCTTCATCAATTGGAAACTTGAGCAATTTACAATTTTTGTACCTTTATGCAAACCATATCATTGGAAGCATTCCTAGTGAAATTGGAAACCTCAATTCCCTCACCACAATACAAGTGGACGGAAACGGTCTTTCTGGACCAATCCCATCTTCCATTGGTAACTTGGTCAATTTGGATACTATTTATCTTTCACAAAATAAACTTTCTGGACCAATTCCTTCCACCATCGGAAATTTAACAAAACTAACTGCAATACTTTTTGACTCAAATGCTCTCACCGGACAAATCCCACATTCAATAGGTAATTTGGTCAACTTAGAAGCTATTTATCTTCCACAAAATAAACTCTCTGGGCCAGTTCCATCTACTATCGGAAATTGTACAAAACTAACTATATTATCTCTTTTCTCAAATGCTCTCACTGGGAATATTCCAACCGAAATGAATAGGGTCACTGATTTGGAAACACTCCAGTTAGCTTACAATAATTTCACAGGTGATTTACCTCACAACATTTGTGTTGGTGGGGAGTTGATTTATTTTAGTATTAATAATAACCAATTTACGGGCCTAATTCCATATAGTTTAAGAAATTGCTTTAGCCTTCAAAGAGTTAGACTTGATCAAAACAGATTAACTGATAATATAACAAATGGGTTTGGTGTGTATCCGAATTTGGTCTACATGGAATTAAGTAATAATAATTTTTATGGACATCTATCATCAAATTGGGGAAAGTGCAAGAATCTCACAAGCCTTAAAATCTCTAATAATAATTTAACAGGAACCATACCACCAGAATTGGGTGATGCAGTTAATTTAGGTGAACTTAACTTGTCTTCAAACCATCTTACTGGAAAAATTCCAAAGGAGCTAGGGAACTTATCTTTTTTGTACAAACTCTCGATAAGTAACAATCATCTTTCGGGAGAAGTTCCTGTACAAATTGCATCATTGCGTGAACTAACTTCCTTGGAGCTTGCAACAAATAATTTAAGTGGCTTCATCCCTGAAAAACTTGGAAGGTTGTCTGCATTATTGCAGTTGAATTTGAGTCACAATAAATTTGAAGGAAACATTCCTGATGATTTTGGCCAATTGAAAGTTATTGAACAACTTGATCTAAGCAAGAATTTTTTAAATGGAACCATACCATCGATGCTGGGACAATTAAATTCTTTAGAAACATTGAATCTCTCACACAATAATCTTTCTGGTACCATTCCCTTGAGCTATGGTGACATGTTAAGCTTGACAAATGTTGATATATCATACAATCAATTGGAGGGTCCAGTTCCAAACATTCCAGCCTTCCAAAATGCCTCATTTAACCAACTCAGAAATAACAAAGGCTTGTGTGGTAATGTCTCTGGCCTTAAGCCTTGCTCAACATCAGGTGGAAACTATCATAGTCATAAGAATAACAGAGTCTTGGTGCTTGTTTTACCCCTCACTCTAGGCACATTATTGTTAGCATTGTTTGTTTTTTGGATCTCATATCATCTATATCAAATTTCAAGAAAAAAAGATTTAAAGGCTCCTGAAGAATCAGACAATGTAAATCTTTTTTCTATATGGAGTTTTGATGGGAAAATGGTGTATGAGAATATTATTGAAGCCACAGAAGAGTTTGACAACAAGCATCTCATTGGAGTTGGAGGGCATGGAAGTGTTTACAGAGCTGAATTGCCCACAGGTCAAGTTGTTGCTGTGAAAAAAATCCATTCATTACAAAATGAAGAAATGTCCAATCTGAAAGCTTTTGAGAGTGAGATTCGTGCTTTGACAGAGATTCGACATCGGAACATTGTGAAGTTATATGGGTTTTGTTCACATTCACTACACTCATTTTTGGTTTATGAATTCTTGGAAAAGGGTAGCATGGACAACATTTTGAAGGAGAATGAAACATCTGGTGAATTTGATTGGAAGAGGAGGGTGAATGTCATTAAAGATGTTGCAAATGCTTTATCTTATATGCATCATGATTGCACACCTCCCATTGTTCATCGTGATATATCCAGCAAGAATGTTATTTTGAATTTGGAATATGTCGCTCATGTTTCGGACTTTGGAACATCTAAGTTTCTAAATCCCAATTCATCCAATTTGACTTCTTTTGCAGGAACGTTTGGATATGCAGCTCCAGAGCTAGCATACACAATGGAAGTAAATGAAAAATGTGATGTGTATAGTTTTGGAATATTAACTTTAGAGATACTTTTTGGGAAGCATCCGGGAGATATTGTAACTTGTTTGTGGCAACAATCTTCAGAAAGTATTATGGACCTGACACTTGATACTTTGCCATGGATGGAGAAGTTGGACCAGCGTCTCCCATATCCCAGAAACAATGTTCAAAAGGACGTGAGTTTGATGATAAGGATAGCAATTTCATGTTTAACCGAAAGTCCAAGATCTCGCCCTACCATGGAGCAGGTCTGCAAAAAGCTTGTAATGTAA 3591 0.364 MLEKMMLLEMACLVLCVCMFVNGTHHIEGSEADALLKWKASLDNQNKTLLASWTGNNPCRWEGIECHHDSKSISKVNLTNIGLKGTLHTLNFSSLQKLHSLVLKNNLFYGVVPHLIRVMSNLDTLDFSQNNFHGSIPNTVGNLSRLSFLDFSSNNLTDTIPSEITHLVGLYTLSMSHNSFLSGYLPREIGRLRNLTLLDISFCNLIGTIPISIEKITNMSHLDFAKNSLSGNIPHGIWKMDLKYLSLQNNNFNDSISQNIFKSRNLEFLHLQESGLYGFMPKEFEMLGNLIDLDISHCNLTGSISISIGKLTNISSLLLNNNQLFGQIPREIGNLAKLKNLFLEHNSLSGSIPREIGFLKQLDLLDLSTNVLSGTIPSSIGNLSNLQFLYLYANHIIGSIPSEIGNLNSLTTIQVDGNGLSGPIPSSIGNLVNLDTIYLSQNKLSGPIPSTIGNLTKLTAILFDSNALTGQIPHSIGNLVNLEAIYLPQNKLSGPVPSTIGNCTKLTILSLFSNALTGNIPTEMNRVTDLETLQLAYNNFTGDLPHNICVGGELIYFSINNNQFTGLIPYSLRNCFSLQRVRLDQNRLTDNITNGFGVYPNLVYMELSNNNFYGHLSSNWGKCKNLTSLKISNNNLTGTIPPELGDAVNLGELNLSSNHLTGKIPKELGNLSFLYKLSISNNHLSGEVPVQIASLRELTSLELATNNLSGFIPEKLGRLSALLQLNLSHNKFEGNIPDDFGQLKVIEQLDLSKNFLNGTIPSMLGQLNSLETLNLSHNNLSGTIPLSYGDMLSLTNVDISYNQLEGPVPNIPAFQNASFNQLRNNKGLCGNVSGLKPCSTSGGNYHSHKNNRVLVLVLPLTLGTLLLALFVFWISYHLYQISRKKDLKAPEESDNVNLFSIWSFDGKMVYENIIEATEEFDNKHLIGVGGHGSVYRAELPTGQVVAVKKIHSLQNEEMSNLKAFESEIRALTEIRHRNIVKLYGFCSHSLHSFLVYEFLEKGSMDNILKENETSGEFDWKRRVNVIKDVANALSYMHHDCTPPIVHRDISSKNVILNLEYVAHVSDFGTSKFLNPNSSNLTSFAGTFGYAAPELAYTMEVNEKCDVYSFGILTLEILFGKHPGDIVTCLWQQSSESIMDLTLDTLPWMEKLDQRLPYPRNNVQKDVSLMIRIAISCLTESPRSRPTMEQVCKKLVM 1196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03708 1196 FunFam Nuclear pore complex protein NUP107 28 182 - -
Vifa3g03708 1196 FunFam Leucine-rich repeat receptor protein kinase MSP1 882 998 - -
Vifa3g03708 1196 Gene3D Ribonuclease Inhibitor 242 414 IPR032675 -
Vifa3g03708 1196 Gene3D Ribonuclease Inhibitor 528 841 IPR032675 -
Vifa3g03708 1196 SUPERFAMILY L domain-like 66 330 - -
Vifa3g03708 1196 PRINTS Leucine-rich repeat signature 767 780 - -
Vifa3g03708 1196 PRINTS Leucine-rich repeat signature 626 639 - -
Vifa3g03708 1196 Gene3D Ribonuclease Inhibitor 415 524 IPR032675 -
Vifa3g03708 1196 ProSitePatterns Protein kinases ATP-binding region signature. 926 949 IPR017441 GO:0005524
Vifa3g03708 1196 FunFam MDIS1-interacting receptor like kinase 2 isoform A 448 548 - -
Vifa3g03708 1196 SUPERFAMILY RNI-like 242 545 - -
Vifa3g03708 1196 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1044 1056 IPR008266 GO:0004672|GO:0006468
Vifa3g03708 1196 ProSiteProfiles Leucine-rich repeat profile. 769 790 IPR001611 GO:0005515
Vifa3g03708 1196 Pfam Leucine rich repeat N-terminal domain 30 66 IPR013210 -
Vifa3g03708 1196 Gene3D Phosphorylase Kinase; domain 1 882 998 - -
Vifa3g03708 1196 Pfam Protein kinase domain 921 1193 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03708 1196 Gene3D Ribonuclease Inhibitor 29 183 IPR032675 -
Vifa3g03708 1196 Gene3D Transferase(Phosphotransferase) domain 1 999 1196 - -
Vifa3g03708 1196 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 237 446 - -
Vifa3g03708 1196 SMART LRR_sd22_2 431 457 - -
Vifa3g03708 1196 SMART LRR_sd22_2 311 337 - -
Vifa3g03708 1196 SMART LRR_sd22_2 479 505 - -
Vifa3g03708 1196 SMART LRR_sd22_2 383 409 - -
Vifa3g03708 1196 SMART LRR_sd22_2 143 166 - -
Vifa3g03708 1196 SMART LRR_sd22_2 192 221 - -
Vifa3g03708 1196 Gene3D Ribonuclease Inhibitor 184 241 IPR032675 -
Vifa3g03708 1196 SUPERFAMILY RNI-like 448 809 - -
Vifa3g03708 1196 PANTHER LEUCINE RICH REPEAT KINASE 2 92 474 - -
Vifa3g03708 1196 SUPERFAMILY Protein kinase-like (PK-like) 897 1194 IPR011009 -
Vifa3g03708 1196 SMART LRR_typ_2 335 359 IPR003591 -
Vifa3g03708 1196 SMART LRR_typ_2 431 455 IPR003591 -
Vifa3g03708 1196 SMART LRR_typ_2 623 647 IPR003591 -
Vifa3g03708 1196 SMART LRR_typ_2 767 789 IPR003591 -
Vifa3g03708 1196 SMART LRR_typ_2 527 551 IPR003591 -
Vifa3g03708 1196 SMART LRR_typ_2 311 334 IPR003591 -
Vifa3g03708 1196 SMART LRR_typ_2 143 167 IPR003591 -
Vifa3g03708 1196 SMART LRR_typ_2 719 743 IPR003591 -
Vifa3g03708 1196 SMART LRR_typ_2 383 407 IPR003591 -
Vifa3g03708 1196 FunFam Uncharacterized protein 549 848 - -
Vifa3g03708 1196 Pfam Leucine rich repeat 696 754 IPR001611 GO:0005515
Vifa3g03708 1196 FunFam MDIS1-interacting receptor like kinase 2 999 1196 - -
Vifa3g03708 1196 ProSiteProfiles Protein kinase domain profile. 920 1196 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03708 Vifa-Chr3 1088327613 1088331320 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03708 192 739 Receptor kinase-like Gene Family AT4G08850 36.248 6.85e-90 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa3g03708 Pkinase 4.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03708 - - tpra:123910542 1620.91