Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03706 ATGACTTCTTTTGCAGGAACGTTTGGATATGCAGCTCCAGAGCTAGCATACACAATGGAAGTAAATGAAAAATGTGATGTGTATAGTTTTGGAATATTAACTTTAGAGATACTTTTTGGGAAGCATCCGGGAGATATTGTAACTTGTTTGTGGCAACAATCTTCAGAAAGTGTTATGGACCTCACACTTGATACTTTGCCATGGATGGAGAAGTTGGACCAGCGTCTCCCATATCCCAGAAACAATGTTCAAAAGGACGTGAGTTTGATGATAAGGATAGCAATTTCATGTTTAACCGAAAGTCCAAGATCTCGCCCTACCATGGAGCAGGTCTGCAAAAAGCTTGTAATGTAA 354 0.3983 MTSFAGTFGYAAPELAYTMEVNEKCDVYSFGILTLEILFGKHPGDIVTCLWQQSSESVMDLTLDTLPWMEKLDQRLPYPRNNVQKDVSLMIRIAISCLTESPRSRPTMEQVCKKLVM 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03706 117 PANTHER LEUCINE RICH REPEAT KINASE 2 1 117 - -
Vifa3g03706 117 SUPERFAMILY Protein kinase-like (PK-like) 1 115 IPR011009 -
Vifa3g03706 117 Pfam Protein kinase domain 1 114 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03706 117 ProSiteProfiles Protein kinase domain profile. 1 117 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa3g03706 117 Gene3D Transferase(Phosphotransferase) domain 1 1 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03706 Vifa-Chr3 1088255419 1088255874 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03706 1 115 Receptor kinase-like Gene Family AT1G75820 39.024 2.99e-19 80.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vifa3g03706 Pkinase 8.3e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03706 - - tpra:123910542 185.652