Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03699 ATGGATTTGGACCAGTGGATCTCGAAGGTTAAAGACGGCCAACACCTTCTCGAAGACGAACTTCAACTTCTCTGCGAATACGTTAAAGAGATTCTTATTGAGGAGTCCAATGTGCAACCTGTCAATAGTCCAGTAACTGTTTGTGGTGATATTCATGGTCAGTTTCATGATCTAATGAAACTTTTTCAGACCGGCGGTCATGTTCCCGAGACAAATTACATTTTTATGGGGGATTTTGTTGATCGGGGTTACAATAGTCTTGAAGTATTCACCATCCTTTTGCTTCTAAAAGCTAGATACCCAGCTAATATTACTCTTCTACGTGGAAATCATGAAAGTAGACAACTCACCCAGGTCTATGGATTTTATGATGAATGCCAGAGAAAGTATGGAAATGCTAATGCTTGGAGATACTGTACTGATGTCTTCGACTATCTTACACTTTCTGCAATTATAGATGGAACTGTACTTTGTGTTCATGGCGGCCTTTCTCCAGACATCCGAACAATTGACCAGAAGAACATAATTAGAATGATACAAAGAATTTGGTCTCAAAAGCTGTCTTTGCATTTAAATTAA 579 0.3886 MDLDQWISKVKDGQHLLEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARYPANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAIIDGTVLCVHGGLSPDIRTIDQKNIIRMIQRIWSQKLSLHLN 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03699 192 ProSitePatterns Serine/threonine specific protein phosphatases signature. 107 112 IPR006186 GO:0016787
Vifa3g03699 192 PRINTS Serine/threonine phosphatase family signature 73 100 IPR006186 GO:0016787
Vifa3g03699 192 PRINTS Serine/threonine phosphatase family signature 44 71 IPR006186 GO:0016787
Vifa3g03699 192 PRINTS Serine/threonine phosphatase family signature 106 130 IPR006186 GO:0016787
Vifa3g03699 192 PRINTS Serine/threonine phosphatase family signature 141 167 IPR006186 GO:0016787
Vifa3g03699 192 Gene3D - 1 191 IPR029052 -
Vifa3g03699 192 SUPERFAMILY Metallo-dependent phosphatases 2 182 IPR029052 -
Vifa3g03699 192 SMART pp2a_7 16 189 IPR006186 GO:0016787
Vifa3g03699 192 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE PP2A-RELATED 2 182 IPR047129 GO:0004722
Vifa3g03699 192 Pfam Calcineurin-like phosphoesterase 44 180 IPR004843 GO:0016787
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03699 Vifa-Chr3 1084601682 1084603492 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03699 43 163 Calmodulin-binding Proteins AT5G63870 47.581 3.10e-28 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03699 K15498 - qlo:115967759 363.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03699 3 1084601682 1084603492 Vifa3g03699 3 1084601682 1084603492 ECH