Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03684 ATGGAAGCAACATCAACTTGCTTCTTCTGCGGTAGAATCCCATCAAAATCCAAACTTGCTTCATCTTCTTCATTTGGGTCATTCTGTTTATTAACACGTAACAATGTTAACACCATCATGTGCAAAACTTCAATGAAAACACATAACCGTGTTATTCAAAACGTCACAAACAGTAACCAAACAAAGCTTCCAAGCAACACAAAAAGAAGAAGGAGGAGAAGAAGAAATGATGTAGCAATAGAAGAACAACAACAGAGGGAAACTGAAATTCAAATACCCTTTGAGAATATGAACAAGAGTGTTCGTGTTCATGTTCATGAGAATACTGGTGACCCAATTGGGTGGAAAGAGGTTGGGAAAAGTGTGGTGAGTTGGATTCGTGAGAGTATGAAAGCTATGGCTTTTGATATTGCTTCTGCTGAGTTAGTCGAAGATTTGGAATTTTCTGAGATGAAACAAAGAATGGGACCTGGTCTTACTTTTGTGATTCAAGCTCAACCTTATTTGAATGCTGTTCCTATGCCTCTTGGACTTGAAGTTATGTGTTTGAAAGCTTGTACGCATTATCCTACTCTCTTTGATCACTTTCAGAGGGAGTTGCGTGATGTTCTTCAAGATATGCAGAGTAAATCGTTGGTTGAGGATTGGCGTGAAACTCAGTCTTGGAAATTGCTTAAGGAACTTGCTAATTCAGCTCAGCACAGGGCAGTTGCGAGGAAGATAGCACAGCCTAAGATGGTCCAAGGTGTTTTAGGAATAGATATAGAAAGAGTCAAAGCGATCCAGAATAGGATAGACGAATTCACCAACAAGATGTCAGAACTGCTCAATATTGAAAGGGATGTTGAATTGGAGTTTACTCAGGAAGAATTGGATGCTGTTCCTAGACCGGATGATGCTTCTGATCCGTCAAAACCAATTGAGTTCTTGGTTAGCCATAGCCAGCCTCAGCAAGAACTATGTGACACCATTTGTAACTTAAATGCCATCAGTACCTCTACAGGATTGGGGGGAATGCATTTGGTGTTATTCAAGATTGAAGGAAACCATCGATTGCCGCCCACTACTCTTTCGCCTGGAGAAATGGTTTGTGTGAGAACTTGCGACAGCAAGGGCGCAGTTACAACTTCTTGCATGCAAGGAGTTGTAGACAATCTTGGCGATGATGGTTATAGTATTACTGTTTCTCTAGAGCTACGCCATGGTGATTCTTCTTTCTCTAAACTAGTTGGAAAGAATGTGCGCATTGACCGTATTCAAGGACTGGCTGATACACTTACCTATGAGCGCAACTGTGAAGCGCTCATGATGCTTCAGAAGAACGGTTTGCGGAAGAAAAATCCATCAATTTCTGTAATTGCAACTCTATTTGGAGATGCGGAAGATGCTGCATGGCTTGAGAAGAATAGTTTGGTTGACTGGGAGGAAGAAAAAACCAATGTAGTTTTAGGAAGTGAATCCTTTGATAAATCTCAGCAGAGAGCAATTGCATTGGGTTTGAACAAGAAGAGGCCACTATTGGTTATCCAAGGACCTCCCGGTACAGGTAAGACTGGTTTGCTCAAGCAACTTATAGCAAGTGCCGTTGAGCAAGGCGAAAGGGTTCTTGTTACAGCACCTACTAATGCAGCTGTTGATAATATGGTGGAAAAGCTTTTAAATGTTGGAATAACTATCGTGCGAGTTGGAAACCCTGCCCGTATATCAAAAACAGTAGCGTCAAAGTCTTTGGGAGAAATTGTAAATAGGAAGCTTGCAAGTTATCGTGAAGAGTATGAGAGGAAGAAGTCTGATCTAAGGAAAGATCTAAGACATTGTTTAAAGGATGATTCATTAGCTGCAGGCATACGGCAACTTCTGAAACAGCTAGGAAAGTCGCTAAAGAAAAAGGAAAAGCTGATGATAGATGAAGTTCTATCTAGTGCTCAGGTTGTGCTTGCCACCAATACCGGAGCAGCCGATCCTTTCATTCGAAAGCTAGATGCTTTTGACTTAGTAGTCATAGACGAAGCTGGACAGGCAATTGAACCGTCTTGCTGGATACCTATATTGCAGGCAAAACGATGTATTCTTGCCGGTGATCAATGCCAACTAGCTCCTGTGATATTTTCTAGAAAAGCGTTAGAAGGTGGTTTAGGAATATCGTTATTGGAGAGAGCTGCAACTTTGCATGAAGGGATTCTCACTACTAGGTTAACTACACAATACCGTATGAATGATGCCATTGCAAGTTGGGCTTCAAAGGAGATGTATGGTGGATTGTTGAAGTCCTCAAAGACTGTTTTTTCTCATCTTCTTGTAGACTCTCCTTTTGTGAAGCCTACATGGATAACACAGTGCCCTTTGCTATTGCTTGACACTCGAATGCCGTATGGAAGTTTATCAGTTGGCTGCGAAGAGTATCTAGATCCGGCTGGAACTGGCTCATTATGTAATGAAGGAGAAGCTGATATAGTTTTGCAGCATGTTTTTTCCTTAATTTATGCTGGTGTTAGCCCAAAAGCTATTGTAGTTCAGTCCCCTTATGTTGCTCAAGTTCAACTTATGAGGGACATGCTTGATGGGGTTCCAGAAGCTGCTGGTATAGAAGTTTCCACAATTGATAGCTTTCAAGGTCGGGAAGCTGATGCTGTAATTTTATCAATGGTACGATCAAACACTTTGGGAGCTGTTGGATTCCTCGGCGATAGCAGAAGAATTAACGTTGCCATCACAAGAGCGCGCAAACATTTAGCTGTAGTATGTGACAGCTCAACTATATGTCACAATCCGTTCCTAGCAAGGCTGATGCGCCATATTCGACATTTTGGTAGGGTGAAGCATGTAGAGCCAGATAGTTTTGGAGGAGGGTTGGGGCTTGGGATGAATCCGATGTTACCTTTTATTGATTAG 2892 0.4177 MEATSTCFFCGRIPSKSKLASSSSFGSFCLLTRNNVNTIMCKTSMKTHNRVIQNVTNSNQTKLPSNTKRRRRRRRNDVAIEEQQQRETEIQIPFENMNKSVRVHVHENTGDPIGWKEVGKSVVSWIRESMKAMAFDIASAELVEDLEFSEMKQRMGPGLTFVIQAQPYLNAVPMPLGLEVMCLKACTHYPTLFDHFQRELRDVLQDMQSKSLVEDWRETQSWKLLKELANSAQHRAVARKIAQPKMVQGVLGIDIERVKAIQNRIDEFTNKMSELLNIERDVELEFTQEELDAVPRPDDASDPSKPIEFLVSHSQPQQELCDTICNLNAISTSTGLGGMHLVLFKIEGNHRLPPTTLSPGEMVCVRTCDSKGAVTTSCMQGVVDNLGDDGYSITVSLELRHGDSSFSKLVGKNVRIDRIQGLADTLTYERNCEALMMLQKNGLRKKNPSISVIATLFGDAEDAAWLEKNSLVDWEEEKTNVVLGSESFDKSQQRAIALGLNKKRPLLVIQGPPGTGKTGLLKQLIASAVEQGERVLVTAPTNAAVDNMVEKLLNVGITIVRVGNPARISKTVASKSLGEIVNRKLASYREEYERKKSDLRKDLRHCLKDDSLAAGIRQLLKQLGKSLKKKEKLMIDEVLSSAQVVLATNTGAADPFIRKLDAFDLVVIDEAGQAIEPSCWIPILQAKRCILAGDQCQLAPVIFSRKALEGGLGISLLERAATLHEGILTTRLTTQYRMNDAIASWASKEMYGGLLKSSKTVFSHLLVDSPFVKPTWITQCPLLLLDTRMPYGSLSVGCEEYLDPAGTGSLCNEGEADIVLQHVFSLIYAGVSPKAIVVQSPYVAQVQLMRDMLDGVPEAAGIEVSTIDSFQGREADAVILSMVRSNTLGAVGFLGDSRRINVAITRARKHLAVVCDSSTICHNPFLARLMRHIRHFGRVKHVEPDSFGGGLGLGMNPMLPFID 963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03684 963 Coils Coil 258 278 - -
Vifa3g03684 963 Pfam AAA domain 488 705 IPR041677 GO:0004386
Vifa3g03684 963 Gene3D - 423 720 IPR027417 -
Vifa3g03684 963 PANTHER DNA2/NAM7 HELICASE FAMILY MEMBER 142 944 - -
Vifa3g03684 963 SMART AAA_5 503 669 IPR003593 GO:0016887
Vifa3g03684 963 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 487 926 IPR027417 -
Vifa3g03684 963 CDD DEXXQc_SMUBP2 487 737 - -
Vifa3g03684 963 Pfam AAA domain 714 917 IPR041679 -
Vifa3g03684 963 CDD SF1_C_Upf1 738 934 IPR047187 -
Vifa3g03684 963 MobiDBLite consensus disorder prediction 55 76 - -
Vifa3g03684 963 Gene3D - 736 945 IPR027417 -
Vifa3g03684 963 Gene3D - 316 422 - -
Vifa3g03684 963 FunFam DNA helicase A 736 944 - -
Vifa3g03684 963 Coils Coil 582 609 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03684 Vifa-Chr3 1079871660 1079875598 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03684 482 572 Core DNA Replication Machinery Family AT1G08840 31.868 1.70e-06 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03684 - - aip:107625008 1461.82