Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03683 ATGAGTTCCACCTGTGGAAGAGAAGGTGTAGGAGGAGCAGTGAGACAGTATATAAGATCAAAAGTCCCTCGTTTGAGATGGACTCCTGAACTTCACCGTTGCTTTGTTAACGCCATTCATACTCTTGGAGGCCATCATAAGGCTACTCCAAAACTTGTTCTTCAGTTAATGGATGTCAAAGGCCTCACCATTTCACATGTCAAAAGCCATCTTCAGATGTACAGAAGCATGAGAGGTGAAATTGGAAAACAAGGTAGGACTAGTTCACAACATAGAAGCCAATGTTTTGAAGAGCATGATGATGGATGTGTTGATGAAATGAATGAGCATTCATGTTCAAAGCTCATGAGAGAAGAATCTGATTCCTTCCTTGGCAACAGTAATATCTTCTCTAAAAGAGCTAGAATCGAGACAAGTTCTACAACAATGCAATGCAGAGAAAGAAGAAGAATATGTGATGGTGATGATGATGATGGTGCAGTAACAATAACAAATCCGTACAGCTTTTATGACCATGAACTGCTGCACAAGAAAAAAGGAATAAAAGATGAAGAAAAGTTTTATGGATGGCAGAGAAAGATTCAACCACATTTTGATTGTGGCATCACTTCTTTCAAATCTCCAAACCAACAACAATCTCATTTCTCTCAGGTTGGTATTGGAAATGGAAATGAGAAAAAGAGTGGTTCATGGTCAATGAAAGGAGTTATGAAAACTGACAAAGCACATGTAGAAGTTGAAAGTGTAGGAGGAGGTGAGTTGTCATTGTCACTAACATTGCAAAATGGTTCAGCTCAGACAAGTAATGGTTGTTATTCGGCAAGTGAAATCAGTGAGGCAATTTCATGCTGGACAACCCCTCCTAAAGACTGCTGCTATAGAACATCTAGTGTTAAAGAAAAGATTAATTTAGACCTATCTTTAGCCATATGTGGCAATTGA 942 0.3885 MSSTCGREGVGGAVRQYIRSKVPRLRWTPELHRCFVNAIHTLGGHHKATPKLVLQLMDVKGLTISHVKSHLQMYRSMRGEIGKQGRTSSQHRSQCFEEHDDGCVDEMNEHSCSKLMREESDSFLGNSNIFSKRARIETSSTTMQCRERRRICDGDDDDGAVTITNPYSFYDHELLHKKKGIKDEEKFYGWQRKIQPHFDCGITSFKSPNQQQSHFSQVGIGNGNEKKSGSWSMKGVMKTDKAHVEVESVGGGELSLSLTLQNGSAQTSNGCYSASEISEAISCWTTPPKDCCYRTSSVKEKINLDLSLAICGN 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03683 313 Pfam Myb-like DNA-binding domain 25 75 IPR001005 -
Vifa3g03683 313 Gene3D - 22 78 - -
Vifa3g03683 313 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 79 IPR017930 -
Vifa3g03683 313 NCBIfam myb-like DNA-binding domain, SHAQKYF class 23 76 IPR006447 GO:0003677
Vifa3g03683 313 MobiDBLite consensus disorder prediction 213 229 - -
Vifa3g03683 313 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 12 155 IPR046955 GO:0003700
Vifa3g03683 313 MobiDBLite consensus disorder prediction 213 232 - -
Vifa3g03683 313 SUPERFAMILY Homeodomain-like 21 77 IPR009057 -
Vifa3g03683 313 FunFam Myb family transcription factor 21 79 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03683 Vifa-Chr3 1078001624 1078003952 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03683 5 78 G2-like Transcription Factor Family AT1G14600 75.000 1.24e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa3g03683 Myb_DNA-binding 5.8e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03683 - - tpra:123923253 345.51