Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03669 ATGGAACTTTCTGCATTCCCCAACTTCAAACTCGTTTCCAATTCTTCATTATTCCATTATACCTCGAATCAAATTCACTCTCGATTCTCTCTTTCTCTTCGTCACTCCCATTATGGCTTTCGGTGTCGGCGTCGCAATTCAAAACCGGTGCCGCAGATCAGGATGTGCTCGGAGAAGCTTCCGAACGGTTCCGGTGGAGTCGAAATCCGAGAAACCAAATCCGATTTCGTCGACGTGATTGCCATTGGCGGTAGGAAGGACGCGGTTTTTGATTTCTGCTTGAACTCGCCGTTTCAGTTGTCTTCTCTGCGCTTTTGGAATGTTATTGTAAAAGATTTACAAGAGGTGCAATTACAACAAAGGCCTACTAAAGAAGAACCTTGCTCAGAAATTGTCAAAGCTCCAGTATTTATGAAGTCATGCTCAAAGACTATTGTCCTTGTGGCTAGTGCTGGATATGGATCAGATCACACCGTCGCCGTTGATATTTTTGAAACTGTAAGGTCCACAAATGGACTCACATTTGCTGTAGTTTTGAAGCCATTTAGCTTTGAAGGGTTGAGACGAAAAGATGAGGTAAAAGCTTTGGTGGGGAAACTTAAGAAGAATACTAATTTACTTATCGAAATTGACATCGATGCACTTCTCAAAAAAGACATGTTGACTCTAGATGAGGCTATGAAGACTGCAAATGACGCTGTTTTGCTAGCTATTAAGGCCATATCAGTTCTAAAATCAGAAATGCACAGAAAATTTATAGATAGATTGCACAATAGCATGAAAGAAGCCTGCAATTCAGAAATTATTAAAATACTGGAATGCTATAAAGAAGCCAGAATTGGATTTGGGGCTGCTTATAATATCAAAGCTTCAATTATGCAGTCTATATTTGATAGTCCTTTTCTGGGTGCTTCTTTGAAGGATTCAAATAGTGCAGTTATATGCATTATTGCGTGTTCTGAACCCATCAATGATAGTGATATAGCAGTCTTTCTGCGTACTTTCCGTCAAACAACACAATACACGAGGGATATTATAATATCAACAGTACTCGAGCCTGATGTCGAGCCCAAACTATTAATCACAACTGTCCTTACACTTGGCAGCTTAACCGTGCAACAACCTTCTGAGAATGGTGGTATACTATCCAAACTTGCCCAGCATTTTCCTCTTGTTTTTAGCTTTTGGGGAAGACATAGTATACAACAAAATTTCTCTGGGAAAGAGGATGCGGTATCTTCTCATGAAATGATGAGATCTTATAGCATTGATGAGAGGGAAAATATGGTTATTCCCCGTACTGACAGATTTGACAAGCAGTATGCAGAGTTGGAGCCAGACGCGAGCAACAACAGCTCAAAGTTGTCTGTTTCAAGGGATTCTGAAAAAAATGAAGATTCATTTGACAATATAGCCAATTCTCCTATCCCTTATGATTCCATTAACGAAGAAGGCGAATCTGCTTTTCAGATGGAACAACTTGGAAACTGGAATCTGGGCCCTGGATTTGAAGTTGCAAAAGAATGGGCCCAAGAAAGGGAAACTGATGTTACACCAGTGGTTGATAGCCTAAGCATATTCCACCTTCCTGTTGGTGTTAGGCCTTCAGAAGAGTTGAAAGACAGTTTAGAAATCTCATTTATGTCAAAAAAGCATGAGCCGGATGCAGTGAAGGAATTTACATCTTCACTTCTGAAGGCAAAACTTGCTAATAGTAGTAAGCCAAAGAAGCATGGTGTTCTGTCTGTTCGTGCTGCATCTATGCTGGAGGCAGAACGCGATTTGTCGATAAAGTGGAGTCCTGTTGTGGAAATACAATATAGGGGAGGAAGATACAAGGGACGATGCCAAGGCGGTCTGCCTGAAGGGAAGGGGCGTCTTGTTCTTGGAGATGGAAATATCTATGACGGTTTATGGCACACTGGCAAGAGATCAGGTCCAGGAACATTCTATTTCAAGAATGGAGATATGTTTCAAGGATCGTGGAGGGATGATGCCATGCACGGCAAGGGTTGGTTTTATTTTCACACTGGTGATCGGTGGTTTGCAAACTTCTGGAAGGGAAAGGCAAATGGAGAGGGGCGGTTTTATACAAAGTCGGGTGATGCCTTCTTTGGAAATTTCAAAGACGGATGGCGGCATGGCCAATTTCTTTGTGTGAATGCAAATGGAACGAGGTACACTGAAAGTTGGGAACGCGGTGTTCTTGTAGACAGCAAGCCTTTAGACTGA 2232 0.4185 MELSAFPNFKLVSNSSLFHYTSNQIHSRFSLSLRHSHYGFRCRRRNSKPVPQIRMCSEKLPNGSGGVEIRETKSDFVDVIAIGGRKDAVFDFCLNSPFQLSSLRFWNVIVKDLQEVQLQQRPTKEEPCSEIVKAPVFMKSCSKTIVLVASAGYGSDHTVAVDIFETVRSTNGLTFAVVLKPFSFEGLRRKDEVKALVGKLKKNTNLLIEIDIDALLKKDMLTLDEAMKTANDAVLLAIKAISVLKSEMHRKFIDRLHNSMKEACNSEIIKILECYKEARIGFGAAYNIKASIMQSIFDSPFLGASLKDSNSAVICIIACSEPINDSDIAVFLRTFRQTTQYTRDIIISTVLEPDVEPKLLITTVLTLGSLTVQQPSENGGILSKLAQHFPLVFSFWGRHSIQQNFSGKEDAVSSHEMMRSYSIDERENMVIPRTDRFDKQYAELEPDASNNSSKLSVSRDSEKNEDSFDNIANSPIPYDSINEEGESAFQMEQLGNWNLGPGFEVAKEWAQERETDVTPVVDSLSIFHLPVGVRPSEELKDSLEISFMSKKHEPDAVKEFTSSLLKAKLANSSKPKKHGVLSVRAASMLEAERDLSIKWSPVVEIQYRGGRYKGRCQGGLPEGKGRLVLGDGNIYDGLWHTGKRSGPGTFYFKNGDMFQGSWRDDAMHGKGWFYFHTGDRWFANFWKGKANGEGRFYTKSGDAFFGNFKDGWRHGQFLCVNANGTRYTESWERGVLVDSKPLD 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03669 743 PANTHER RADIAL SPOKE HEAD 1 HOMOLOG 103 734 - -
Vifa3g03669 743 SMART morn 702 723 IPR003409 -
Vifa3g03669 743 SMART morn 656 677 IPR003409 -
Vifa3g03669 743 SMART morn 610 631 IPR003409 -
Vifa3g03669 743 SMART morn 633 654 IPR003409 -
Vifa3g03669 743 Gene3D Tubulin/FtsZ, GTPase domain 119 367 IPR036525 -
Vifa3g03669 743 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 609 737 - -
Vifa3g03669 743 Gene3D - 683 740 - -
Vifa3g03669 743 Gene3D - 610 669 - -
Vifa3g03669 743 MobiDBLite consensus disorder prediction 443 477 - -
Vifa3g03669 743 SUPERFAMILY Tubulin nucleotide-binding domain-like 79 243 IPR036525 -
Vifa3g03669 743 Pfam MORN repeat 617 633 IPR003409 -
Vifa3g03669 743 Pfam MORN repeat 705 716 IPR003409 -
Vifa3g03669 743 Pfam MORN repeat 635 657 IPR003409 -
Vifa3g03669 743 Pfam MORN repeat 658 680 IPR003409 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03669 Vifa-Chr3 1075243618 1075256664 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03669 42 743 PP2C-type Phosphatase Gene Family AT1G75010 46.853 0.0 624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03669 - - gsj:114371951 1052.35