Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03668 ATGGAACTTTCTGCATTCCCCAACTTCAAACTCGTTTCCAATTCTTCATTATTCCATTATACCTCGAATCAAATTCACTCTCGATTCTCTCTTTCTCTTCGTCACTCCCATTATGGCTTTCGGTGTCGGCGTCGCAATTCAAAACCGGTGCCGCAGATCAGGATGTGCTCGGAGAAGCTTCCGAACGGTTCCGGTGGAGTCGAAATCCGAGAAACCAAATCCGATTTCGTCGACGTGATTGCCATTGGCGGTAGGAAGGACGCGGTTTTTGATTTCTGCTTGAACTCGCCGTTTCAGTTGTCTTCTCTGCGCTTTTGGAATGTTATTGTAAAAGATTTACAAGAGGTGCAATTACAACAAAGGCCTACTAAAGAAGAACCTTGCTCAGAAATTGTCAAAGCTCCAGTATTTATGAAGTCATGCTCAAAGACTATTGTCCTTGTGGCTAGTGCTGGATATGGATCAGATCACACCGTCGCCGTTGATATTTTTGAAACTGTAAGGTCCACAAATGGACTCACATTTGCTGTAGTTTTGAAGCCATTTAGCTTTGAAGGGTTGAGACGAAAAGATGAGGTAAAAGCTTTGGTGGGGAAACTTAAGAAGAATACTAATTTACTTATCGAAATTGACATCGATGCACTTCTCAAAAAAGACATGTTGACTCTAGATGAGGCTATGAAGACTGCAAATGACGCTGTTTTGCTAGCTATTAAGGCCATATCAGTTCTAAAATCAGAAATGCACAGAAAATTTATAGATAGATTGCACAATAGCATGAAAGAAGCCTGCAATTCAGAAATTATTAAAATACTGGAATGCTATAAAGAAGCCAGAATTGGATTTGGGGCTGCTTATAATATCAAAGCTTCAATTATGCAGTCTATATTTGATAGTCCTTTTCTGGGTGCTTCTTTGAAGGATTCAAATAGTGCAGTTATATGCATTATTGCGTGTTCTGAACCCATCAATGATAGTGATATAGCAGTCTTTCTGCGTACTTTCCGTCAAACAACACAATACACGAGGGATATTATAATATCAACAGTACTCGAGCCTGATGTCGAGCCCAAACTATTAATCACAACTGTCCTTACACTTGGCTTAACCGTGCAACAACCTTCTGAGAATGGTGGTATACTATCCAAACTTGCCCAGCATTTTCCTCTTGTTTTTAGCTTTTGGGGAAGACATAGTATACAACAAAATTTCTCTGGGAAAGAGGATGCGGTATCTTCTCATGAAATGATGAGATCTTATAGCATTGATGAGAGGGAAAATATGGTTATTCCCCGTACTGACAGATTTGACAAGCAGTATGCAGAGTTGGAGCCAGACGCGAGCAACAACAGCTCAAAGTTGTCTGTTTCAAGGGATTCTGAAAAAAATGAAGATTCATTTGACAATATAGCCAATTCTCCTATCCCTTATGATTCCATTAACGAAGAAGGCGAATCTGCTTTTCAGATGGAACAACTTGGAAACTGGAATCTGGGCCCTGGATTTGAAGTTGCAAAAGAATGGGCCCAAGAAAGGGAAACTGATGTTACACCAGTGGTTGATAGCCTAAGCATATTCCACCTTCCTGTTGGTGTTAGGCCTTCAGAAGAGTTGAAAGACAGTTTAGAAATCTCATTTATGTCAAAAAAGCATGAGCCGGATGCAGTGAAGGAATTTACATCTTCACTTCTGAAGGCAAAACTTGCTAATAGTAGTAAGCCAAAGAAGCATGGTGTTCTGTCTGTTCGTGCTGCATCTATGCTGGAGGCAGAACGCGATTTGTCGATAAAGTGGAGTCCTGTTGTGGAAATACAATATAGGGGAGGAAGATACAAGGGACGATGCCAAGGCGGTCTGCCTGAAGGGAAGGGGCGTCTTGTTCTTGGAGATGGAAATATCTATGACGGTTTATGGCACACTGGCAAGAGATCAGGTCCAGGAACATTCTATTTCAAGAATGGAGATATGTTTCAAGGATCGTGGAGGGATGATGCCATGCACGGCAAGGGTTGGTTTTATTTTCACACTGGTGATCGGTGGTTTGCAAACTTCTGGAAGGGAAAGGCAAATGGAGAGGGGCGGTTTTATACAAAGTCGGGTGATGCCTTCTTTGGAAATTTCAAAGACGGATGGCGGCATGGCCAATTTCTTTGTGTGAATGCAAATGGAACGAGGTACACTGAAAGTTGGGAACGCGGTGTTCTTGTAGACAGCAAGCCTTTAGACTGA 2229 0.4181 MELSAFPNFKLVSNSSLFHYTSNQIHSRFSLSLRHSHYGFRCRRRNSKPVPQIRMCSEKLPNGSGGVEIRETKSDFVDVIAIGGRKDAVFDFCLNSPFQLSSLRFWNVIVKDLQEVQLQQRPTKEEPCSEIVKAPVFMKSCSKTIVLVASAGYGSDHTVAVDIFETVRSTNGLTFAVVLKPFSFEGLRRKDEVKALVGKLKKNTNLLIEIDIDALLKKDMLTLDEAMKTANDAVLLAIKAISVLKSEMHRKFIDRLHNSMKEACNSEIIKILECYKEARIGFGAAYNIKASIMQSIFDSPFLGASLKDSNSAVICIIACSEPINDSDIAVFLRTFRQTTQYTRDIIISTVLEPDVEPKLLITTVLTLGLTVQQPSENGGILSKLAQHFPLVFSFWGRHSIQQNFSGKEDAVSSHEMMRSYSIDERENMVIPRTDRFDKQYAELEPDASNNSSKLSVSRDSEKNEDSFDNIANSPIPYDSINEEGESAFQMEQLGNWNLGPGFEVAKEWAQERETDVTPVVDSLSIFHLPVGVRPSEELKDSLEISFMSKKHEPDAVKEFTSSLLKAKLANSSKPKKHGVLSVRAASMLEAERDLSIKWSPVVEIQYRGGRYKGRCQGGLPEGKGRLVLGDGNIYDGLWHTGKRSGPGTFYFKNGDMFQGSWRDDAMHGKGWFYFHTGDRWFANFWKGKANGEGRFYTKSGDAFFGNFKDGWRHGQFLCVNANGTRYTESWERGVLVDSKPLD 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03668 742 Gene3D - 682 739 - -
Vifa3g03668 742 Pfam MORN repeat 657 679 IPR003409 -
Vifa3g03668 742 Pfam MORN repeat 704 715 IPR003409 -
Vifa3g03668 742 Pfam MORN repeat 634 656 IPR003409 -
Vifa3g03668 742 Pfam MORN repeat 616 632 IPR003409 -
Vifa3g03668 742 MobiDBLite consensus disorder prediction 442 476 - -
Vifa3g03668 742 SMART morn 701 722 IPR003409 -
Vifa3g03668 742 SMART morn 655 676 IPR003409 -
Vifa3g03668 742 SMART morn 609 630 IPR003409 -
Vifa3g03668 742 SMART morn 632 653 IPR003409 -
Vifa3g03668 742 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 608 736 - -
Vifa3g03668 742 Gene3D Tubulin/FtsZ, GTPase domain 119 368 IPR036525 -
Vifa3g03668 742 PANTHER RADIAL SPOKE HEAD 1 HOMOLOG 103 733 - -
Vifa3g03668 742 SUPERFAMILY Tubulin nucleotide-binding domain-like 79 243 IPR036525 -
Vifa3g03668 742 Gene3D - 609 668 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03668 Vifa-Chr3 1075243618 1075256664 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03668 42 742 PP2C-type Phosphatase Gene Family AT1G75010 46.639 0.0 624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03668 - - gsj:114371951 1040.02