Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03667 ATGGCTGCTTCATCTTCCTCGGCGTCGCTTTTTGGATTCAGAGAAGAGGATCCAAATCAAATGAATCAACAGCAACATTCTTTGCCACCATCATCTGCAACTGCAGCTCCAGCTGCTGCTGCTGCTACTGCTCAGAAGAAAAAGAGAAACCAACCTGGAACACCAAATCCAGATGCAGAGGTGATAGCACTATCTCCCAAGACCCTAATGGCAACAAACAGGTTTATCTGTGAGGTATGCAACAAAGGGTTCCAAAGAGAGCAAAACCTACAGCTCCACAGAAGAGGACACAACTTGCCTTGGAAGCTTAAGCAGAAGACAACAAAAGAGCCTAAGAGAAAGGTTTATCTCTGTCCTGAACCTACATGTGTTCATCATGACCCTTCAAGAGCACTCGGTGACCTCACCGGAATCAAGAAACACTTCTCTCGCAAACACGGCGAGAAGAAATGGAAGTGTGATAAGTGTTCTAAGAAATACGCTGTTCAATCTGATTGGAAAGCACATTCCAAAACTTGTGGCACAAGAGAATATAGGTGCGACTGCGGTACTCTCTTCTCCAGGAGAGACAGTTTCATAACTCACAGAGCCTTCTGTGATGCATTGGCTCAAGAGGGTCCAAGACAGCCACCAATAACCCTAACAGGTGCCATTGGGTCCCATCTTTTCGGAAGTGGCGGCAGCGGCGGAGGTGGCGGCAACAACAACAGCATGGATTTAAACTTATCCCAAGTTGCTCCACAAATGTCCAACATGCAACATCAACATGACCATCACAGCAATTCAGCCACTGAAATTCTGCGACTCGGTGCAGCCGCGAGTCGAACCGGACAATTCGACCACCACAACATTCTCCAATCCACTTTCAGACCTAATTCCTTCTTCAACAATAGCATTCATGAGCCAAACCAAAACTATATCCCTGACCAAGGATTAATGATGCAGCAGAATAACAACAGCGGCAACAGCAACAATCTCTTCAACATTCCGAATTTCCTTTCGAGTGGAACAAGTAGTGCTCCGTCACTCTTCAGCAACTGTTTCCCTCAGGGAGGTGGAAACAGTAGCAACAACAACATTAACGCTGTTACTTCTATATCTTCAATGTCAGCAACTGCACTTCTTCAGATAGCTGCTCAAATGGGTGCAACTTCAAGCAATGGAAACGGTACTACCGCAACTTCGCTTCTGAAGAACTTCGGAAACAACACTCCTGCTACTAATTCAGCTTCTTCCGGTGGTGTTGGTGTTGGTGTTGGTGCTGGTGCCAGTGCTGGTGTTGGTGAGCATAATAGAGTTCTGCAGATGGGAGGTGGAAGTGTAAACTATGGTTTTGGTGGTGCGAATAACGAACAGACTAATTTACAGGATTTGATGAACTCTTTTGCTGCTACTGGAAATACTTCAATATTTGAAACTGGAAGAGGAGGTTTAGGGCTTGGAAGTGGAGGTGCAGATAGCAGTCAACTAACTCGTGACTTTTTAGGAGTTGGTGAGATACAACTGCATTTAACTTGCCAAGTTCAATGGAAGGAGATCAAAGAAACATTCATGCTGCACAATCCTTTGGAGGTGGAGGAAGAGGAGGAGCCGGTGGTGGAACAGGAGCAGGAAATTTTCACTAATCATTACTATCAATCATCCTTCATAAAGAGGGTTTTCAACATGCTCCATTGGAACTTGATCTAA 1689 0.4529 MAASSSSASLFGFREEDPNQMNQQQHSLPPSSATAAPAAAAATAQKKKRNQPGTPNPDAEVIALSPKTLMATNRFICEVCNKGFQREQNLQLHRRGHNLPWKLKQKTTKEPKRKVYLCPEPTCVHHDPSRALGDLTGIKKHFSRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAQEGPRQPPITLTGAIGSHLFGSGGSGGGGGNNNSMDLNLSQVAPQMSNMQHQHDHHSNSATEILRLGAAASRTGQFDHHNILQSTFRPNSFFNNSIHEPNQNYIPDQGLMMQQNNNSGNSNNLFNIPNFLSSGTSSAPSLFSNCFPQGGGNSSNNNINAVTSISSMSATALLQIAAQMGATSSNGNGTTATSLLKNFGNNTPATNSASSGGVGVGVGAGASAGVGEHNRVLQMGGGSVNYGFGGANNEQTNLQDLMNSFAATGNTSIFETGRGGLGLGSGGADSSQLTRDFLGVGEIQLHLTCQVQWKEIKETFMLHNPLEVEEEEEPVVEQEQEIFTNHYYQSSFIKRVFNMLHWNLI 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03667 562 Pfam Zinc-finger double-stranded RNA-binding 75 97 IPR022755 -
Vifa3g03667 562 ProSiteProfiles Zinc finger C2H2 type domain profile. 75 97 IPR013087 -
Vifa3g03667 562 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 23 514 IPR031140 -
Vifa3g03667 562 Gene3D Classic Zinc Finger 54 123 - -
Vifa3g03667 562 SMART c2h2final6 75 97 IPR013087 -
Vifa3g03667 562 SMART c2h2final6 116 146 IPR013087 -
Vifa3g03667 562 SMART c2h2final6 151 171 IPR013087 -
Vifa3g03667 562 FunFam protein indeterminate-domain 5, chloroplastic-like 129 208 - -
Vifa3g03667 562 MobiDBLite consensus disorder prediction 1 32 - -
Vifa3g03667 562 FunFam protein indeterminate-domain 12-like 54 122 - -
Vifa3g03667 562 Gene3D Classic Zinc Finger 129 205 - -
Vifa3g03667 562 MobiDBLite consensus disorder prediction 1 60 - -
Vifa3g03667 562 SUPERFAMILY beta-beta-alpha zinc fingers 74 171 IPR036236 -
Vifa3g03667 562 ProSitePatterns Zinc finger C2H2 type domain signature. 77 97 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03667 Vifa-Chr3 1074043783 1074048366 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03667 45 255 IDZ Gene Family AT2G02070 80.282 2.73e-115 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa3g03667 zf-C2H2_jaz 3.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03667 K25870 - gmx:100799389 502.286