Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03653 ATGGACACTTCAAATCCTGCTGCATTTGTTAATGCCCAGGCTCTTCCCAATTTCATTGGAAAGAAAGTGAGAATTGTGGTTCAGGTGAATCAGTCTGATGGAGCGGTGACCACAGGAAAATCCACTGATGAATCTCAGATAATTGTGAAAGGGTTATCACCACAAGTGCCTGTTTTGAATTATGTTGAGGTTATTGGCATTGCTGAAAGTAGTAACACTATCCGTGCTGAGATATTTACAGACTTTGGTGCCACATTTGATGTCAACTCTTACAATCAGTTATGCCAACTTGCAAATGGTGAATTCAGGAATCTGTTTCTTTAG 324 0.4012 MDTSNPAAFVNAQALPNFIGKKVRIVVQVNQSDGAVTTGKSTDESQIIVKGLSPQVPVLNYVEVIGIAESSNTIRAEIFTDFGATFDVNSYNQLCQLANGEFRNLFL 107
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03653 107 Pfam Replication factor A protein 3 1 100 IPR013970 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vifa3g03653 107 CDD RPA3 6 106 - -
Vifa3g03653 107 Gene3D - 2 107 IPR012340 -
Vifa3g03653 107 PANTHER REPLICATION PROTEIN A 14 KDA SUBUNIT A-RELATED 1 107 - -
Vifa3g03653 107 SUPERFAMILY Nucleic acid-binding proteins 5 106 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03653 Vifa-Chr3 1071208225 1071209024 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03653 1 107 Core DNA Replication Machinery Family AT4G18590 63.551 3.47e-46 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03653 K10740 - gmx:100781484 163.696