Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03646 ATGTTTCGGGAGGCAATCGCCGTGTCCGCCGCCACGACGCGGTGGGCGAGTCATCAAACTCAGTGGACTCGTGACCACGACAAGCTCTTCGAGCGAGCTCTTTTGATCGTGCCGGAGGATTTGCCGAACCGGTGGGAGAAGATCGCTGAGCAAGTTCCGGGGAAGTCGGCGGCGGAAGTTAGGGATCACTATGAGGCTTTGGTTCATGATGTGTTGGAGATTGATTCCGGTAGGGTTGAGGTTCCGAGTTACTCTGATGAATCGGCGGTGAGTGGTGCGGGGTTGAATGAATGGGATTCTTCTAATCAAATTTCGTTTGGTTCCAAGGTTAAACATGGCGGTGGTGATAACGAGAGGAAGAAAGGAACGCCGTGGAGTGAAGAAGAACATAGGTTGTTTCTTATTGGGCTTAGCAAGTATGGAAAAGGTGATTGGAGAAGCATATCAAGAAATGTTGTTGTGACAAGAACACCAACGCAGGTAGCTAGCCATGCTCAAAAGTACTTTCTTCGCCAGAACTCGGGGAAGAAAGAGCGAAAAAGATCAAGTATTCATGACATTACTTCTGTAGACAGTAACTCTGCTCCTACCCCTATTGATCAGAACTGGGTTCCTCCTCCTGGTGGTGGTTCAATGCAACAGTCTCAAGAAACGCAGCATTATCCATCAAACAATTTTCAAGATCCAATGGGTACATTTGGGTATTCAAGTTATAGTTATCAGATGTAA 729 0.4746 MFREAIAVSAATTRWASHQTQWTRDHDKLFERALLIVPEDLPNRWEKIAEQVPGKSAAEVRDHYEALVHDVLEIDSGRVEVPSYSDESAVSGAGLNEWDSSNQISFGSKVKHGGGDNERKKGTPWSEEEHRLFLIGLSKYGKGDWRSISRNVVVTRTPTQVASHAQKYFLRQNSGKKERKRSSIHDITSVDSNSAPTPIDQNWVPPPGGGSMQQSQETQHYPSNNFQDPMGTFGYSSYSYQM 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03646 242 ProSiteProfiles Myb-like domain profile. 22 68 IPR001005 -
Vifa3g03646 242 SUPERFAMILY Homeodomain-like 119 173 IPR009057 -
Vifa3g03646 242 CDD SANT 22 68 IPR001005 -
Vifa3g03646 242 SUPERFAMILY Homeodomain-like 20 76 IPR009057 -
Vifa3g03646 242 ProSiteProfiles Myb-like domain profile. 117 169 IPR001005 -
Vifa3g03646 242 MobiDBLite consensus disorder prediction 171 228 - -
Vifa3g03646 242 ProSiteProfiles SANT domain profile. 120 173 IPR017884 -
Vifa3g03646 242 MobiDBLite consensus disorder prediction 171 186 - -
Vifa3g03646 242 MobiDBLite consensus disorder prediction 106 125 - -
Vifa3g03646 242 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 17 228 IPR043363 -
Vifa3g03646 242 Gene3D - 123 174 - -
Vifa3g03646 242 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 117 173 IPR017930 -
Vifa3g03646 242 FunFam transcription factor MYB1R1 123 174 - -
Vifa3g03646 242 Pfam Myb-like DNA-binding domain 124 169 IPR001005 -
Vifa3g03646 242 Pfam Myb-like DNA-binding domain 21 64 IPR001005 -
Vifa3g03646 242 CDD SANT 124 169 IPR001005 -
Vifa3g03646 242 SMART sant 18 70 IPR001005 -
Vifa3g03646 242 SMART sant 121 171 IPR001005 -
Vifa3g03646 242 MobiDBLite consensus disorder prediction 207 228 - -
Vifa3g03646 242 FunFam Transcription factor SRM1 14 81 - -
Vifa3g03646 242 NCBIfam myb-like DNA-binding domain, SHAQKYF class 120 172 IPR006447 GO:0003677
Vifa3g03646 242 Gene3D - 14 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03646 Vifa-Chr3 1067906899 1067908414 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa3g03646 Myb_DNA-binding 2.6e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03646 - - gmx:547481 370.163