Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa3g03636 ATGCTTCTTCCTATGAGCTGCATTCTTTTAATATGTCTGTTGAGTTCTTTCTCAACCCAAATCAAAGCCACTAAAAGTATTTCAAATCTCACCTTACCCCACCAACATCCTTACCCTGAAGCTGTAGTTCATGAACTTCAAGAGAAAATCAATGTGTCACTTTCCAGAAGAGAACTCCTCGGAAAAACCCAAGGCGGTTGTTTAACTGGAAACCCAATAGATGATTGCTGGCGCTGCGACACGAACTGGGCGGCGAACCGTCAGAAGTTAGCCGAATGCGGAATCGGATTCGGGCGCGCTGCCATGGGAGGCAAAAACGGCCAGATCTATGTTGTCAGAGACTCCTCCGACTCCGACCCGGCGAATCCCGTTCCAGGCACACTCCGTCACGCGGTTATCCAAGACGAACCTCTCTGGATAGTCTTCTCCGCCGACATGACAATAAACCTCCGCCACGAACTTATCTTCAACAGCTTCAAAACCGTCGACGGGCGCGGCGCGAATGTTCAGATCACCGGTCACGGTTGCATCACACTCCAATATATCTCAAATGTTATCATCCATAACATCCATGTTCATCACTGTAAACCCTCCGGGAACACTAACATACGCGCGAGTCCAACGCATGTAGGGTACAGAGGGATTTCGGACGGTGACGGAATATCAATCTTCGGTTCTAGAAACATCTGGATCGACCATTGCTCGTTGTCTTACTGTACCGACGGTTTAATCGACGCTATAATGGGGTCCACTGCTATAACGATTTCGAATAACCATTTTGGTCATCACGATGAAGTTATGCTTTTAGGTCATAACGATAAATACACTCCTGATAGAGGAATGCAAGTTACCATTGCGTTTAATCACTTCGGAGAAGGACTTGTTCAGAGAATGCCACGGTGCAGGCTCGGTTACATTCATGTCGTTAACAACGATTTTACGCAGTGGGAAATGTATGCTATCGGCGGTAGTGCTAACCCTACTATCAACAGCCAGGGCAACCGTTACACCGCTCCCTCCGATCCAAACGCGAAAGAGGTGACGAAGCGCGTGGAGACAGATGATAAAGAGTGGAGCGGTTGGAATTGGCGGACGGAAGGGGACGTAATGGTAAATGGAGCGTTCTTTGTGCCGTCGGGAGCTGGGATGAGTGCACAGTACGCGCAGGCGTCGAGCGTGCAACCCAAGTCCGCCGCACAAATCGATCAGTTCACCATGTACTCCGGTGTATTCGGTGATCCCAGGGATAATGGAGATATATATCCCGGTTTCAACGGCGCCGGGACCACGACTGGAGCCACCAGCAAGGGCTACAATGAGGGACCCAACAGTGACGGTGGAGACATCTTTGGTATGATATTCAAAGGCAGTAGCAGCCAAGCAGCACCACCAGCACCATACTCTTCAATTGTATTTGTTTCAACTTTCTTGTCTCTTTTAATTATTTTCAATTTGGACGTTATCACCAACTATGATATTCTATTATCATTATTATGA 1497 0.481 MLLPMSCILLICLLSSFSTQIKATKSISNLTLPHQHPYPEAVVHELQEKINVSLSRRELLGKTQGGCLTGNPIDDCWRCDTNWAANRQKLAECGIGFGRAAMGGKNGQIYVVRDSSDSDPANPVPGTLRHAVIQDEPLWIVFSADMTINLRHELIFNSFKTVDGRGANVQITGHGCITLQYISNVIIHNIHVHHCKPSGNTNIRASPTHVGYRGISDGDGISIFGSRNIWIDHCSLSYCTDGLIDAIMGSTAITISNNHFGHHDEVMLLGHNDKYTPDRGMQVTIAFNHFGEGLVQRMPRCRLGYIHVVNNDFTQWEMYAIGGSANPTINSQGNRYTAPSDPNAKEVTKRVETDDKEWSGWNWRTEGDVMVNGAFFVPSGAGMSAQYAQASSVQPKSAAQIDQFTMYSGVFGDPRDNGDIYPGFNGAGTTTGATSKGYNEGPNSDGGDIFGMIFKGSSSQAAPPAPYSSIVFVSTFLSLLIIFNLDVITNYDILLSLL 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa3g03636 498 FunFam Pectate lyase 70 412 - -
Vifa3g03636 498 SUPERFAMILY Pectin lyase-like 65 390 IPR011050 -
Vifa3g03636 498 PRINTS Pollen allergen Amb family signature 390 413 IPR018082 -
Vifa3g03636 498 PRINTS Pollen allergen Amb family signature 297 316 IPR018082 -
Vifa3g03636 498 PRINTS Pollen allergen Amb family signature 153 169 IPR018082 -
Vifa3g03636 498 PRINTS Pollen allergen Amb family signature 319 338 IPR018082 -
Vifa3g03636 498 PRINTS Pollen allergen Amb family signature 117 142 IPR018082 -
Vifa3g03636 498 PRINTS Pollen allergen Amb family signature 217 238 IPR018082 -
Vifa3g03636 498 PRINTS Pollen allergen Amb family signature 361 385 IPR018082 -
Vifa3g03636 498 PRINTS Pollen allergen Amb family signature 93 110 IPR018082 -
Vifa3g03636 498 SMART amb_all 145 342 IPR002022 -
Vifa3g03636 498 PANTHER PECTATE LYASE 18-RELATED 33 411 IPR045032 GO:0030570
Vifa3g03636 498 Gene3D - 43 412 IPR012334 -
Vifa3g03636 498 Pfam Pectate lyase 153 334 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa3g03636 Vifa-Chr3 1061901427 1061905799 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa3g03636 1 483 Polysaccharide Lyase AT3G53190 61.680 0.0 576
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa3g03636 K01728 - gmx:100808438 829.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa3g03636 3 1061901427 1061905799 Vifa3g03636 3 1061901427 1061905799 ECH